Gene detail information of Glyur000182s00014517 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54370.1 | 2.00E-119 | Late embryogenesis abundant (LEA) protein-related |
| NR | XP_004487671.1 | 0 | PREDICTED: uncharacterized protein LOC101504102 [Cicer arietinum] |
| trEMBL | tr|A0A072V9T9|A0A072V9T9_MEDTR | 0 | Root cap/late embryogenesis-like protein {ECO:0000313|EMBL:KEH38804.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00182 | 52702 | 53888 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000182s00014517.1 | PF06830.6 | Root_cap | 248 | 304 | 1.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.216 |
| SRR1783600 | control | 0.217 |
| SRR1783602 | moderate drought stress | 0.299 |
| SRR1811619 | moderate drought stress | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.106 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.709 |
| SRR2868004 | Drought Stress (root) | 38.944 |
| SRR2967015 | Control (root) | 30.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.066 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.007 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.107 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.740 |
| SRR8749028 | MeJA induced 9h | 0.596 |
| SRR8749029 | MeJA induced 9h | 1.242 |
| SRR8749030 | Uninduced | 0.277 |
| SRR8749031 | Uninduced | 0.290 |
| SRR8749032 | Uninduced | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.099 |
| SRR8400027 | Control - Root | 4.933 |