Gene detail information of Glyur000181s00013106 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44620.1 | 7.00E-75 | protein tyrosine phosphatases;protein tyrosine phosphatases |
| NR | AFK45648.1 | 4.99E-146 | unknown [Lotus japonicus] |
| COG | NP_682600.1 | 4.00E-54 | low molecular weight phosphotyrosine protein [Thermosynechococcus elongatus BP-1] |
| trEMBL | tr|I3SZF6|I3SZF6_LOTJA | 2.00E-146 | Uncharacterized protein {ECO:0000313|EMBL:AFK45648.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 218740 | 221144 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000181s00013106.1 | PF01451.16 | LMWPc | 81 | 233 | 6.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.291 |
| SRR1783600 | control | 22.312 |
| SRR1783602 | moderate drought stress | 22.359 |
| SRR1811619 | moderate drought stress | 22.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.004 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.730 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.643 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 76.482 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.642 |
| SRR2868004 | Drought Stress (root) | 26.120 |
| SRR2967015 | Control (root) | 23.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.578 |
| SRR9715740 | Leaf | 86.679 |
| SRR9715741 | Leaf | 63.471 |
| SRR9715739 | Root | 8.085 |
| SRR9715742 | Root | 8.654 |
| SRR9715743 | Root | 10.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.377 |
| SRR8749028 | MeJA induced 9h | 5.214 |
| SRR8749029 | MeJA induced 9h | 6.412 |
| SRR8749030 | Uninduced | 2.114 |
| SRR8749031 | Uninduced | 1.291 |
| SRR8749032 | Uninduced | 2.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.577 |
| SRR8400027 | Control - Root | 25.051 |