Gene detail information of Glyur000181s00013103.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27760.1 | 2.00E-139 | tRNAisopentenyltransferase 2 |
| NR | XP_004506145.1 | 0 | PREDICTED: tRNA dimethylallyltransferase 2-like isoform X2 [Cicer arietinum] |
| COG | YP_002250801.1 | 4.00E-39 | tRNA delta(2)-isopentenylpyrophosphate transferase [Dictyoglomus thermophilum H-6-12] |
| Swissprot | tr|Q9ZUX7|IPT2_ARATH | 1.00E-169 | tRNA dimethylallyltransferase 2 |
| trEMBL | tr|G7JKX7|G7JKX7_MEDTR | 0 | tRNA isopentenyltransferase {ECO:0000313|EMBL:AES88437.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 202232 | 205993 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00791 | miaA, TRIT1 | EC:2.5.1.75 | Zeatin biosynthesis | map00908 |
| Zeatin biosynthesis | map00908 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000181s00013103.2 | PF01715.12 | IPPT | 75 | 315 | 7.40E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.274 |
| SRR1783600 | control | 12.261 |
| SRR1783602 | moderate drought stress | 12.387 |
| SRR1811619 | moderate drought stress | 12.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.864 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.827 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.568 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.870 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.662 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.359 |
| SRR2868004 | Drought Stress (root) | 14.861 |
| SRR2967015 | Control (root) | 17.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.924 |
| SRR9715740 | Leaf | 12.609 |
| SRR9715741 | Leaf | 11.424 |
| SRR9715739 | Root | 1.745 |
| SRR9715742 | Root | 7.537 |
| SRR9715743 | Root | 5.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.376 |
| SRR8749028 | MeJA induced 9h | 11.051 |
| SRR8749029 | MeJA induced 9h | 13.694 |
| SRR8749030 | Uninduced | 6.883 |
| SRR8749031 | Uninduced | 6.977 |
| SRR8749032 | Uninduced | 8.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.386 |
| SRR8400027 | Control - Root | 15.838 |