Gene detail

Gene detail information of Glyur000181s00013091.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22620.2	2.00E-173	phosphoglycerate/bisphosphoglycerate mutase family protein
NR	XP_007132387.1	0	hypothetical protein PHAVU_011G090600g [Phaseolus vulgaris]
COG	YP_007094591.1	1.00E-59	phosphoglycerate mutase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9FNJ9\|CA1P_ARATH	0	Probable 2-carboxy-D-arabinitol-1-phosphatase {ECO:0000305} (Precursor)
trEMBL	tr\|G4VUY8\|G4VUY8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04381.1}

Sequence

Transcript Sequence

>Glyur000181s00013091.1
CTCTAATTTTATATATTATTATTTTATTTTATTATTATCCTATGAGTTTTCATGTTTGGCATTTCTTGGAACACGTGTCTTTCCCTCGGCATCTCCCTCCAAACATGGCGATATGGAAGCAACGGCCACCATATGTTAAAAAAAAAAAAAAAGAGCCACTCACAACTCACAAGGCAGTGAGTGACAGTGTCAGGCATAGTAAGAGAAGAGGAAACAAAGCCAGATGGTTTTGGTAGTAAGGCCCTGTTGTTCTCCCGTGCGTGTTATCCGCGATCACCATCAGCTCCATTCCACAGGCTCGGTCACGAAGCCGTACCCGACCCGACACGTGGNACTCCGATGCTCCCGGAGCAGCGTGCAGGAGATAGAAGAGCAGAAGCCGGAACATGCGGGATTGGGCTCGGAGTCGCCGTTCCCGTCGCTGAAGGTGGCGAAGAGGGTGGTGCTGGTGAGGCACGGGCAGAGCACGTGGAACGCCGAAGGCAGGATCCAAGGTAGTTCCGACTTCTCCGTTCTCACCAAGAAAGGGGAGTCTCAGGCTGAAACTTCCCGCCAAATGCTCATCGATGATCACTTCGATGCCTGCTTCGCCAGTCCTTTGGCACGATCCAAGAGAACCGCTGAAATCATTTGGGGTCCTCGCCAACAACCCATCATTCCTGATTTCCAGCTGAGGGAAATCGATTTGTACTCCTTTCAAGGTCTGTTGAAGCACGAGGGAAAAGAGAGATTTGGTTCTGCTTATCGTCAGTGGCAGATGGATGCTGCGAATTTCATCATTGACGGTCATTATCCCGTGAGAGAGCTGTGGGATCGAGCTAGAGGCTGCTGGACTAGAATCCTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCTATTGGTCTGGAGGCAGAGTATTTCAGAACTTTACTTCAGAGCAATTGTGGTGTAAGTGTGCTGGATTTCACCCCAAGATCCGAGGGTGGGTCGCCACATATTTGCCTTAACCGCTTAAATCAGACCCCTGGTTCACCTCTTGCTGGCGGGAAATCTGGAGGTAGAGAGACAAGTAAGCGGATCATACTTGTTTGTAACGGATCTACACAAGGAAATACAGAGGATGGTTTTCCTTTTGCTGGTGATCAACCGATGAACATGCTTGGTGTTATACAGTCCCAGAAATCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATATTTAGCAGTCCTAACAAAGCTTGTGTTGAAACAGCCATGGCCATATCCAAGGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCACGCTATGTTGAGATTAAGCAGATGGGGAGCCTTGATATTGGAACTATCTTCAAACAATCCAAAATGGCAAGTAACTTACAGTTTAGACGTGTTTGTGCATGGAAGACTGATCTGTCACCCGATATATCCAATTGTCCGCCATTTCAGCCCGGGTGGTTAAATAGAGTTGAAGATGGATTGAGAACAACATTATGGGATCAATCTGGAAAAGCCTGGCAGTCCCTATTGGATGAAATATCTGATGAATCTAGGCCAGAAGAAGTTGTAGTTGCAGCTGGTCCTCCTGTGATTCACATAGCACTAATGGCACACTGCCTTAATTTGACCAAGGAATGGTTGGGATCATTTCATCTTGATGCAGGGAGCGTTAGCGTCCTTGACTTCCCCGACGGACCCAAGGGAAGAGGCGTAATCAGGTGCATAAACTATACTGCACACTTGGGGAGATGGTCCATCCCTATTACAAGACCAACAGAGGATGTTGAAGAGTTTTAACTTTTAACTGTAAATCTATGATTCTGAAATTAACTTGAAATGACACCCAGCACTCAATTGAAGAGTTTAAGAGGTTCAACGAGATCGTGATTGTTAAAATTTTAAGGCATGATAGTAAAAATGAAATCGTAGCCAGGGAATGTGACCAAGGGTGGGACATTGACAATACGTTTTTTCTCTTCTTTCTTCATGGTTAATATACAGGGAAAAATGCATTCACCTGACCTGAGATCCGCTTAAATGGTGCACACACCATCTATCTATTCTATAAAAGGCATTGATTTCCCCTTAGTTAGACATTAGCTTCCCCTGAATTCTATAAAAACACGTTAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00181	159963	164700	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15634	gpmB	EC:5.4.2.12	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Glycolysis / Gluconeogenesis	map00010
			Methane metabolism	map00680
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000181s00013091.1	PF00300.17	His_Phos_1	72	225	1.30E-33
Glyur000181s00013091.1	PF00300.17	His_Phos_1	290	386	7.60E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.174
SRR1783600	control	4.223
SRR1783602	moderate drought stress	8.428
SRR1811619	moderate drought stress	8.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.678
DRR006520	Root Summer glycyrrhizin high producing strain	3.639
DRR006521	Root Winter glycyrrhizin high producing strain	7.653
DRR006522	Root Winter glycyrrhizin high producing strain	7.079
DRR006523	Root Summer glycyrrhizin low producing strain	3.902
DRR006524	Root Summer glycyrrhizin low producing strain	4.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	104.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	103.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.690
SRR2868004	Drought Stress (root)	6.562
SRR2967015	Control (root)	6.128

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.056
SRR9715740	Leaf	69.812
SRR9715741	Leaf	28.037
SRR9715739	Root	1.261
SRR9715742	Root	2.683
SRR9715743	Root	2.676

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.391
SRR8749028	MeJA induced 9h	3.384
SRR8749029	MeJA induced 9h	4.506
SRR8749030	Uninduced	4.657
SRR8749031	Uninduced	3.574
SRR8749032	Uninduced	4.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.036
SRR8400027	Control - Root	6.498