Gene detail

Gene detail information of Glyur000181s00013088

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27810.1	0	nucleobase-ascorbate transporter 12
NR	XP_003540223.1	0	PREDICTED: nucleobase-ascorbate transporter 12-like [Glycine max]
COG	YP_007308721.1	2.00E-80	xanthine/uracil permease [Natronococcus occultus SP4]
Swissprot	tr\|Q3E7D0\|NAT12_ARATH	0	Nucleobase-ascorbate transporter 12
trEMBL	tr\|I1LTS1\|I1LTS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G30670.1}

Sequence

Transcript Sequence

>Glyur000181s00013088.1
ACTACTTGTAGCTAGCTCCNCACTCTCAGGCTCAGCTCTCATCTCAACTTCTTCAACGTTTTAATTTTCCANCTTCAATTCCACCTCCCACTTCTCGCTACACATTGATTGTCCAGTTTCACTCACACTCTCACTTCGTTCACTTCTTCTGTGCTTTGGCGGGGAAAAACCCTAGCACAGCACCTTCGCGCTTCTGCATTGCCCCCACGCGCCACTCCCTAGATCCGCCACCAACCGTTCAAGCTATGCTTCTCTAGCTTCTTCCCGACATGTCCAATTCCGATCCCAACAACCGCAACCTCCCGGCAACGGCAATGCCGCCTTCATCCTGGGCCAAGAAGACCGGCTTCAAGCCCAAATTCTCCGGCGAGACCAATGGCAGCGACTCGGGCCAGATAATAAGCAGCCTCCCACCCAAGCCCAGAGAACCCGAACCGAACCTGGATCTCGAAGCTGGTCAGGTTCGGCAACCCGCAAACGGCGTCGCACATGGTGCCAAGGTTCCCGTTCCGGCACCGCTTCCTCCTTCGTCTGCTAAGGATCAACCGGTGAAGAAACGGAGGGATTCCGATGGCGTTCCCAGCACCAACGGTCAGGCAACTCCGGCACCGGTGGCGGACCAGCCGTCGCAGCCGCGGATAACGGCGAGGCACGAGGAAGTGGTGGATGACGAAGGGTTTGCGTCTAGGCACTCGCATATGAAGTATGAGCTCAGAGATTCTCCTGGTTTAGTTCCCATCGGTGTGTACGGTATCCAGCATTACGTTTCGATATTAGGTTCGTTGATTCTCATTCCACTTGTCATTGTTCCTGCCATGGGAGGCACTCATGAGGAAACTTCAATGGTGGTGTCGACCGTGCTCTTCGTCTCGGGGGTGACTACGCTGTTGCATATTAGTTTTGGTTCCAGGTTGCCCTTGATACAAGGCCCTTCTTTCGTTTATCTGGCGCCAGCTCTGGCTATAATCAACTCCCCAGAGTTTCAAGGATTAAACGGAAATAAATTCAATCATATAATGAAGGAGCTTCAGGGGGCCATAATTATTGGATCTGCTTTTCAAGCTTTACTTGGATATACTGGACTTATGTCGCTTTTAGTAAGGTTGATCAATCCTGTAGTTGTATCTCCAACNATAGCTGCCGTTGGACTTTCATTTTACAGTTATGGCTTCCCATTAGTCGGNACATGCCTTGAGATTGGTGCAGTACAGATATTAGTGGTTATTGTTTTTGCTCTTTATCTACGTAAGATATCAGTTCTTGGACATCGCATATTTCTAATATATGCTGTTCCTTTGGGTCTAGCAATTACATGGGCATTTGCTTTCTTGCTAACCGAAACAGGAACTTACAGCTACAAAGGGTGTGATATAAATATACCTGCATCAAATATGGTTTCAGAGNACTGCAGAAAGCATTTTTCAAGGATGAAGCATTGTCGGGTTGATACTTCTCAGGCATTGAATTCCTCTCCATGGTTTAGATTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAATTGGCTCTTGTAATGTGTGTGATTTCCTTAATCTCATCTGTGGATTCGGTTGGCTCATACCATGCATCCTCATTATTGGTAGCATCCAGACCTCCAACTCCTGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTTCCAGTGTCTTGGCTGGTCTCTGGGGAACTGGAACTGGGTCTACTACTTTAACTGAAAATGTTCATACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTGTAGGTAAGGTTGGAGGGTTCATTGCTTCAATTCCTGGAGTCATGGTTGCTGGTCTCCTCTGCTTTATGTGGGCAATGCTCACAGCATTGGGCTTGTCAAATCTACGCTATAGTGAGGCTGGAAGCTCTCGCAATATCATTATAGTTGGATTATCATTGTTTTTCTCTCTTTCCATACCTGCCTACTTTCAACAATATGGCATCTCTCCAAATTCCAACCTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTAGCTTCTCANGGGCCTTTCCACAGCAAATATGGAGGGTTGAACTATGTCTTGAACACGCTTTTTTCACTACACATGGTGATAGCATTTCTTGTTGCTGTTATCCTGGATAATACTGTACCTGGTAGTCGGCAGGAGCGAGGGGTATATGTTTGGTCCGAACCTGAAGTTGCTAGAAGGGAACCTGCTGTTACTAAGGACTATGAGTTACCCTGGAGAGTTGGTCGGATTTTCAGATNGGTGAAATGGGTTGGCCTGTGAAAGATTCGGGTTTTGGTGGTTGGCATTTTCACTCCATTAAATGCTGCTCTCAACTGCTCATGGGACACCAGAGTAATTCACACACGTCTTGGGGCTCAATGATGATAGTAATAGGTCATGTTACAGAGTAAATTTGTATACATTGGGGGAGTGGGTCCGTAGGGTTCTATTTGTGTTGTGATTTTATTAGATTAACCATGTATCTAGTTCTAATGATTCATTCAAAATCTCCAGGTGGATTTTCTTTTTCTTGCTTTAAGGCGAGGTTTGACAAATCATTTTGAATGTATATATACTATTTTTCTTCCAGTTTTATCCAGCTTCATTGTAATTCCTTTTATGTGGCAAGCCATATATGCACATGTATGTGTGTGGTCATGGAAAAGAGAGTGCATCTTTAGGNCAGTAAAAGATTTGTACAGTTGTTGCTAGAATCTTGAAAGTTTATTTCGTGAATAAACCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00181	138426	146927	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000181s00013088.1	PF00860.15	Xan_ur_permease	159	576	2.50E-69
Glyur000181s00013088.2	PF04414.7	tRNA_deacylase	6	82	1.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.819
SRR1783600	control	16.673
SRR1783602	moderate drought stress	13.910
SRR1811619	moderate drought stress	13.968

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.648
DRR006520	Root Summer glycyrrhizin high producing strain	10.839
DRR006521	Root Winter glycyrrhizin high producing strain	12.193
DRR006522	Root Winter glycyrrhizin high producing strain	10.997
DRR006523	Root Summer glycyrrhizin low producing strain	5.567
DRR006524	Root Summer glycyrrhizin low producing strain	5.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.943
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.361

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.190
SRR2868004	Drought Stress (root)	19.568
SRR2967015	Control (root)	17.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.333
SRR9715740	Leaf	4.916
SRR9715741	Leaf	4.243
SRR9715739	Root	11.094
SRR9715742	Root	8.739
SRR9715743	Root	9.443

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.785
SRR8749028	MeJA induced 9h	6.970
SRR8749029	MeJA induced 9h	9.268
SRR8749030	Uninduced	5.159
SRR8749031	Uninduced	4.278
SRR8749032	Uninduced	5.454

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.216
SRR8400027	Control - Root	23.616