Gene detail information of Glyur000181s00013082.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27650.1 | 7.00E-40 | U2 snRNP auxiliary factor small subunit, putative |
| NR | XP_010278242.1 | 3.86E-47 | PREDICTED: splicing factor U2af small subunit B-like [Nelumbo nucifera] |
| Swissprot | tr|Q9S709|U2AFA_ARATH | 3.00E-46 | Splicing factor U2af small subunit A |
| trEMBL | tr|A0A068V4B2|A0A068V4B2_COFCA | 3.00E-47 | Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313|EMBL:CDP15354.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 86159 | 93309 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.290 |
| SRR1783600 | control | 2.088 |
| SRR1783602 | moderate drought stress | 8.397 |
| SRR1811619 | moderate drought stress | 8.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.974 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.870 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.436 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.602 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.379 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.784 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.201 |
| SRR2868004 | Drought Stress (root) | 8.060 |
| SRR2967015 | Control (root) | 6.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.608 |
| SRR9715740 | Leaf | 0.504 |
| SRR9715741 | Leaf | 0.820 |
| SRR9715739 | Root | 0.137 |
| SRR9715742 | Root | 0.849 |
| SRR9715743 | Root | 0.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.526 |
| SRR8749028 | MeJA induced 9h | 13.447 |
| SRR8749029 | MeJA induced 9h | 6.049 |
| SRR8749030 | Uninduced | 4.506 |
| SRR8749031 | Uninduced | 6.216 |
| SRR8749032 | Uninduced | 5.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.853 |
| SRR8400027 | Control - Root | 3.986 |