Gene detail information of Glyur000181s00013078 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22740.1 | 3.00E-47 | cellulose synthase-like A02 |
| NR | XP_003606274.1 | 6.45E-63 | Glucomannan 4-beta-mannosyltransferase [Medicago truncatula] |
| COG | YP_001840189.1 | 1.00E-08 | glycosyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] |
| Swissprot | tr|Q9FNI7|CSLA2_ARATH | 3.00E-55 | Glucomannan 4-beta-mannosyltransferase 2 |
| trEMBL | tr|G7JM39|G7JM39_MEDTR | 2.00E-63 | Cellulose synthase-like protein A1 {ECO:0000313|EMBL:AES88471.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 66844 | 68142 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.015 |
| SRR1783600 | control | 17.564 |
| SRR1783602 | moderate drought stress | 10.469 |
| SRR1811619 | moderate drought stress | 10.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.465 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.167 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.418 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.408 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.734 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.704 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.424 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.267 |
| SRR2868004 | Drought Stress (root) | 7.569 |
| SRR2967015 | Control (root) | 4.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.711 |
| SRR9715740 | Leaf | 0.198 |
| SRR9715741 | Leaf | 0.203 |
| SRR9715739 | Root | 3.250 |
| SRR9715742 | Root | 4.529 |
| SRR9715743 | Root | 10.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.032 |
| SRR8749028 | MeJA induced 9h | 0.714 |
| SRR8749029 | MeJA induced 9h | 0.534 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.095 |
| SRR8749032 | Uninduced | 0.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.823 |
| SRR8400027 | Control - Root | 27.558 |