Gene detail

Gene detail information of Glyur000181s00013077

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08230.2	6.00E-166	Transmembrane amino acid transporter family protein
NR	XP_003606284.1	0	Lysine histidine transporter [Medicago truncatula]
Swissprot	tr\|F4HW02\|GAT1_ARATH	0	GABA transporter 1
trEMBL	tr\|G7JM48\|G7JM48_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:AES88481.1}

Sequence

Transcript Sequence

>Glyur000181s00013077.1
CTCTATATAGTCTTATTATTATGCATTCGATCACTCTGTTCTTTTGTTAGAGCCTTCAAATTAAACAGGAGAGAGGCAGAGAGGAGATGGGTACGCTGCTTCCAACCTCAACAGCAGCACTTGAATCAGAGAAGCCAAATCCTCACCAAAAAGATGTTGATGCTGGCGCTCTCTTTGTCCTCAAATCAAAAGGTTCATGGGTGCACTGTGGTTACCACTTGACAACATCAATAGTGGCTCCACCACTTCTAAGCCTTCCTTATGCTTTCACCTTCCTTGGATGGACGGCTGGGATTTTTTGCTTGGTCATTGGGGCTTTGGTCACTTTCTATTCCTACAATTTATTATCTATGGTTCTTGAACACCACGCCCAGTTGGGTAATCGTCAGCTACGATTTAGAGACATGGCTCGCGACATTTTAGGTCCACGATGGGGTCGTTATTTTGTGGGCCCAATTCAGTTCGCAGTCTGCTATGGGGCTGTAGTGGCNTGTACTCTCTTGGGAGGACAATGCATGAAGGCAATTTACCTGCTGTCAAACCCAAATGGGGCCATGAAGCTTTACGAGTTTGTTATCATATTTGGTTGCTTCATGTTGATTTTGGCTCAAATCCCATCTTTCCACTCATTGAGGCACATTAATCTTGTGTCTTTGGTTCTGTGCTTATCCTATAGTGCCTGTGCTACTGCTGGTTCCATATATATTGGAAACTCATCAAAAGGACCGGAAAAGGATTACTCTTTGAAAGGTGATACAGAGAATCGATTATTTGGAATCTTCAATGCTGTTGGCATCATTGCCACGACATACGGAAATGGAATAATTCCAGAAATTCAGGCCACATTAGCACCACCCGTAAAAGGGAAGATGTTCAAGGGACTAAGTGTTTGTTATGCTGTACTTACAGCCACTTTCTTTAGCGTAGCTATATCTGGTTATTGGGCATTTGGCAACGAATCTGAAGGCCTCATCTTAACCAACTTCGTGGACAATGGGAAGCCTTTAGTGCCCAAGTGGTTCATTTATATGACCAATGTCTACTTGCAGCCTACAAATGAAGTGTTGGAGCAAACATTTGGGGACCCAACAAGCCCTGAGTTCTCAAACCGCAATGTAATTCCCAGAGTGATTTCTCGGTCATTGGCAATTGCTATTGCAACCACTATAGCAGCCATGATTCCATTTTTTGGGGACATAAACTCGCTTNTAGGAGCTTTTGGCTTTATGCCACTTGACTTCGTTTTGCCTGTGGTTTTCTTCAATTTGACATTTAAGCCATCTAAGCGAAGCCTCATTTTCTGGTTGAACGTGACCATTGCTGTGGCTTTCTCCGCATTGGGAGCCATAGCATCAATTGCAGCAGTAAGACAGATAGTCCTCGATGCCAAAAATTACCAATTATTTGCTAATGTATGATCACGTTAATTAGGCCATCCTAAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00181	40688	44689	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000181s00013077.1	PF01490.13	Aa_trans	35	427	1.40E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.181
SRR1783600	control	1.158
SRR1783602	moderate drought stress	1.235
SRR1811619	moderate drought stress	1.268

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.280
DRR006520	Root Summer glycyrrhizin high producing strain	0.297
DRR006521	Root Winter glycyrrhizin high producing strain	13.757
DRR006522	Root Winter glycyrrhizin high producing strain	13.841
DRR006523	Root Summer glycyrrhizin low producing strain	0.145
DRR006524	Root Summer glycyrrhizin low producing strain	0.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.863
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.429

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.838
SRR2868004	Drought Stress (root)	15.872
SRR2967015	Control (root)	13.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.265
SRR9715740	Leaf	37.889
SRR9715741	Leaf	48.134
SRR9715739	Root	5.936
SRR9715742	Root	4.304
SRR9715743	Root	4.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.567
SRR8749028	MeJA induced 9h	1.304
SRR8749029	MeJA induced 9h	1.187
SRR8749030	Uninduced	14.637
SRR8749031	Uninduced	34.835
SRR8749032	Uninduced	11.926

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.540
SRR8400027	Control - Root	8.323