Gene detail information of Glyur000181s00013073 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08200.1 | 0 | UDP-D-apiose/UDP-D-xylose synthase 2 |
| NR | XP_006592299.1 | 0 | PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2-like [Glycine max] |
| COG | YP_008147805.1 | 5.00E-89 | hypothetical protein SCE1572_06750 [Sorangium cellulosum So0157-2] |
| Swissprot | tr|Q9SGE0|AXS2_ARATH | 0 | UDP-D-apiose/UDP-D-xylose synthase 2 |
| trEMBL | tr|I1LRB8|I1LRB8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G08930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00181 | 7454 | 10625 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000181s00013073.1 | PF01370.16 | Epimerase | 49 | 326 | 1.20E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 835.220 |
| SRR1783600 | control | 821.049 |
| SRR1783602 | moderate drought stress | 377.889 |
| SRR1811619 | moderate drought stress | 376.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 855.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 848.204 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.850 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 46.267 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 86.797 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 85.324 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 69.601 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 68.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 219.215 |
| SRR2868004 | Drought Stress (root) | 139.842 |
| SRR2967015 | Control (root) | 121.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.772 |
| SRR9715740 | Leaf | 59.813 |
| SRR9715741 | Leaf | 52.680 |
| SRR9715739 | Root | 802.016 |
| SRR9715742 | Root | 1003.093 |
| SRR9715743 | Root | 956.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 129.791 |
| SRR8749028 | MeJA induced 9h | 92.054 |
| SRR8749029 | MeJA induced 9h | 118.294 |
| SRR8749030 | Uninduced | 59.205 |
| SRR8749031 | Uninduced | 44.846 |
| SRR8749032 | Uninduced | 45.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 263.771 |
| SRR8400027 | Control - Root | 281.639 |