Gene detail

Gene detail information of Glyur000180s00014076.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40860.1	0	protein kinase family protein / protein phosphatase 2C ( PP2C) family protein
NR	XP_004497719.1	0	PREDICTED: protein kinase and PP2C-like domain-containing protein-like [Cicer arietinum]
COG	YP_003709340.1	5.00E-19	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q940A2\|P2C31_ARATH	0	Probable protein phosphatase 2C 31
trEMBL	tr\|V7BKC4\|V7BKC4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17500.1}

Sequence

Transcript Sequence

>Glyur000180s00014076.1
CAACAATCATTTTTTTTAATTAAATCTCATCCATTTGATTAATTTAATGATCGTTATATTAATCCAACAAAGTGAGATTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACTTCAGCATCCAATTGTGTGTGTGTCTAGCTTTTCATCTTCATCTGAATCCATTCACTCTCAGTGTTCACACAAGAAGAGAGAGAGGTAGCGAATGGGGATAGAGATAGTGGAGCCAAACACGTGTATAAGGGGTTGCTGCACCAGCTCCTCCATTCCCCTCCATCTCCCTCCTTCCTCTTTCTCTTTTCTCTCCCCTATTGCCCGAGGGGCTGAGAGTGTTGTTTATGAAGGGACTTTGGATGGCCAGAAGGTTGCTGTGAAGAAACCCATCTTGTCAGTTTCAGAAGACATTAATAACAAGCTAGATCACCCGGGAATAGCAACACTACTTGCAGCCCATGCAAAGCCACCCAATTACATGTTTTTCTTCAAGTTGTACGAATCTTCGAATCTTGCACAGAAGTTACATGTGGAAGAATGGGCCCCAACTGTCAACGACGCNCTTATGATGACAATGCAGTTAGCAAAGGCTTTGCAATATCTGCATAAACTCGGGATTCTACATAGGGATGTGAAACCAGCAAATATTCTTCTTGACAAAAATCTTCGTCCGCACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATATTAAGGGAGTTTCTCTTGAGAATTGGAAGTCTTCTGGAAAACCTACTGGTGGTTTTCACAAAAAGAATATGGTTGGAACACTCATTTACATGGCACCTGAAATATTAACAAAGGAGTTACACACAGAAAAGTCAGATATAAGAAAAGTTGAGCGGAATGGAGGTATTGTCATCGTATATCTGATGCTGATAATTATCTACCGCAAGAGGAACCGGACGCAACAATTTGACCTTGATGCAATATGCTATTTTTTGGTTTCCGAGTTGATTAGCTTGGTGCTCAAGAATATTCATACAAACAGAAACATACACAGGACAACTTTTTATGGAAATTATTATTGCATGTCAACCCGAGTTATACTAGAAGGAAGCTTGCTTTATGCTCACACAGTGCTTGAGATGAACTACACTGAACAACAACTAACAGCGGCTGTTGTTTCTGATGGATTACGGCCGGTCCTTGCTAGTGAGGAGTTGGGTATACCGTCAAAATTATTATCATTGATACAGAAGTGCTGGGATGCAAATCCTAAAAGCAGACCTTCCTTTGATGATATTGTCAAGGAACTTGATTCTATTATGGAGCAAAGGAAGGTAAAGAAGGTAGAAGATATGCATATTAGACCCTGTAACTTGCATGTAGACCAACTTGAGGACAAGACTTACCAGGCTTATCAAGAGGGTATTAGCTGGTCCACCCAAGGTGAACTTTTGGCCAGGAATGCCTCTAGTGCAACTGATTCTGGTTTGAGCACATGGTGTGAGTCTTATGACGAGACTTTGGCATATCATCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGGAGAAGGGAGACTATGGAGGACACACATTTCATTCTTCCCCATGTTTGCAATGAAAAGGATATCTATGCTTTCGGTATCTTCGATGGCCACAGAGGTNCAGCAGCTGCTGAGTTTTCTTCTAGGGCTGTACCAGCAGTTTTGCAAACTTTAGTGTTTATGGGAAGTCCTGCTAATGCACTAGTGGAAGCATTCCTTAGGACAGATACTGCCTTCAGAAAAGAGCTTGATTCCTATCGTAAATCCAACAGATGCATCCAAAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTCTTGTTGTCAGGAACAAGCTATTTGTTGCTAATATCGGTGATTGCAGGGCGATCTTATGCCGTGCGGGTAATCCCATTGCTCTGAGTAAGGATCATGTTGCAAGCTGTCTTGAAGAGAGAGAGCGTGTTATTCGTCATGGGGGCCATGTACATTGGCAAGTTGACACCTGGAGAGTTGGTCTTCCTGCGCTTCAGGTCACACGTTCTATTGGCGANGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACCGAGAGCACCCTATGTGCAGAGGATGAATTTCTGGTCATGGCTAGTGATGGCCTCTGGGATGTCATAAGCAGTATGGAGGTCATAAATATAATAAAAGACACTGTTAAAGAGCCTGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAGGACAACATTACAGTTATTGTCGTTTTTTTACGTGCTGTATCCACAGCAGAGAGAATTTATTAGCATGCCTTCATTTTGAATGCTAGTTGAGACTTGTCACAGATGGTATATTTTTTTGTCTAAACCAGGGTATCTCCGTGCTCANGAGGGGACTAACATTTTTTGTCACAGATGGTGTATACTCTATATGCCTTTATTGATTATATAAAAATGTGTACTCTGAAACCTTGGATTCTGATTAATAATTCAGTTGATTGAAGAACCATCTCCTATAAGCTGTATCCTTTGAAGCGTGTGATTCTAATTTGCANAAGACTTCAATGTCCAACCATCTCGTGACCAAGATTATCAAACTCGAGTGTTATGTAAACTCAGTTGAACCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00180	189842	196577	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000180s00014076.1	PF00069.20	Pkinase	32	355	8.50E-33
Glyur000180s00014076.1	PF00481.16	PP2C	438	685	3.50E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.473
SRR1783600	control	7.480
SRR1783602	moderate drought stress	7.963
SRR1811619	moderate drought stress	7.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.179
DRR006520	Root Summer glycyrrhizin high producing strain	11.028
DRR006521	Root Winter glycyrrhizin high producing strain	14.428
DRR006522	Root Winter glycyrrhizin high producing strain	14.138
DRR006523	Root Summer glycyrrhizin low producing strain	11.352
DRR006524	Root Summer glycyrrhizin low producing strain	11.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.009
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.697

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.791
SRR2868004	Drought Stress (root)	12.395
SRR2967015	Control (root)	11.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.544
SRR9715740	Leaf	16.956
SRR9715741	Leaf	16.048
SRR9715739	Root	5.032
SRR9715742	Root	10.714
SRR9715743	Root	9.457

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.054
SRR8749028	MeJA induced 9h	6.968
SRR8749029	MeJA induced 9h	2.455
SRR8749030	Uninduced	7.003
SRR8749031	Uninduced	2.066
SRR8749032	Uninduced	2.526

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.380
SRR8400027	Control - Root	10.568