Gene detail information of Glyur000180s00014074 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56720.1 | 4.00E-25 | |
| NR | XP_004497722.1 | 0 | PREDICTED: arginine/serine-rich coiled-coil protein 2-like isoform X3 [Cicer arietinum] |
| trEMBL | tr|K7K8Z3|K7K8Z3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G27365.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00180 | 183434 | 188391 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000180s00014074.1 | PF15477.1 | SMAP | 396 | 466 | 3.40E-18 |
| Glyur000180s00014074.2 | PF15477.1 | SMAP | 396 | 466 | 3.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.991 |
| SRR1783600 | control | 31.209 |
| SRR1783602 | moderate drought stress | 50.468 |
| SRR1811619 | moderate drought stress | 50.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.423 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.534 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 84.238 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 81.660 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.273 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 63.452 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.732 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.352 |
| SRR2868004 | Drought Stress (root) | 54.901 |
| SRR2967015 | Control (root) | 59.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.592 |
| SRR9715740 | Leaf | 40.888 |
| SRR9715741 | Leaf | 34.401 |
| SRR9715739 | Root | 3.758 |
| SRR9715742 | Root | 18.211 |
| SRR9715743 | Root | 15.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.844 |
| SRR8749028 | MeJA induced 9h | 46.253 |
| SRR8749029 | MeJA induced 9h | 28.417 |
| SRR8749030 | Uninduced | 35.546 |
| SRR8749031 | Uninduced | 37.665 |
| SRR8749032 | Uninduced | 28.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 52.103 |
| SRR8400027 | Control - Root | 48.176 |