Gene detail information of Glyur000180s00014072 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80270.3 | 3.00E-169 | PENTATRICOPEPTIDE REPEAT 596 |
| NR | XP_003518031.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Glycine max] |
| Swissprot | tr|Q9C977|PP135_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial (Precursor) |
| trEMBL | tr|I1JB37|I1JB37_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G00270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00180 | 165102 | 168877 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000180s00014072.1 | PF13812.1 | PPR_3 | 246 | 274 | 0.3 |
| Glyur000180s00014072.1 | PF13812.1 | PPR_3 | 314 | 346 | 0.083 |
| Glyur000180s00014072.1 | PF01535.15 | PPR | 424 | 444 | 0.18 |
| Glyur000180s00014072.1 | PF01535.15 | PPR | 452 | 480 | 0.16 |
| Glyur000180s00014072.1 | PF01535.15 | PPR | 486 | 509 | 0.15 |
| Glyur000180s00014072.1 | PF13812.1 | PPR_3 | 523 | 551 | 0.00026 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.281 |
| SRR1783600 | control | 17.903 |
| SRR1783602 | moderate drought stress | 15.834 |
| SRR1811619 | moderate drought stress | 16.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.093 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.435 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.067 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.632 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.507 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.970 |
| SRR2868004 | Drought Stress (root) | 33.441 |
| SRR2967015 | Control (root) | 29.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.672 |
| SRR9715740 | Leaf | 22.017 |
| SRR9715741 | Leaf | 12.087 |
| SRR9715739 | Root | 3.543 |
| SRR9715742 | Root | 21.809 |
| SRR9715743 | Root | 21.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 77.127 |
| SRR8749028 | MeJA induced 9h | 52.657 |
| SRR8749029 | MeJA induced 9h | 50.684 |
| SRR8749030 | Uninduced | 7.855 |
| SRR8749031 | Uninduced | 4.433 |
| SRR8749032 | Uninduced | 8.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.629 |
| SRR8400027 | Control - Root | 34.342 |