Gene detail information of Glyur000180s00014064 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51550.1 | 2.00E-142 | EXORDIUM like 3 |
| NR | XP_007131327.1 | 0 | hypothetical protein PHAVU_011G004400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FHM9|EXOL3_ARATH | 1.00E-180 | Protein EXORDIUM-like 3 (Precursor) |
| trEMBL | tr|V7AGX9|V7AGX9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03321.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00180 | 116272 | 117327 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000180s00014064.1 | PF04674.7 | Phi_1 | 68 | 346 | 1.50E-112 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 725.278 |
| SRR1783600 | control | 733.772 |
| SRR1783602 | moderate drought stress | 578.773 |
| SRR1811619 | moderate drought stress | 575.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 638.938 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 635.489 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.331 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.454 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 524.843 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 528.281 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 133.846 |
| SRR2868004 | Drought Stress (root) | 79.831 |
| SRR2967015 | Control (root) | 108.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.249 |
| SRR9715740 | Leaf | 37.766 |
| SRR9715741 | Leaf | 18.893 |
| SRR9715739 | Root | 841.617 |
| SRR9715742 | Root | 339.970 |
| SRR9715743 | Root | 439.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 466.758 |
| SRR8749028 | MeJA induced 9h | 104.313 |
| SRR8749029 | MeJA induced 9h | 99.039 |
| SRR8749030 | Uninduced | 15.989 |
| SRR8749031 | Uninduced | 1.298 |
| SRR8749032 | Uninduced | 5.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 290.222 |
| SRR8400027 | Control - Root | 358.728 |