Gene detail information of Glyur000180s00014060 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51545.1 | 7.00E-34 | low psii accumulation2 |
| NR | XP_004506611.1 | 7.34E-74 | PREDICTED: uncharacterized protein LOC101503878 isoform X1 [Cicer arietinum] |
| Swissprot | tr|F4KDA6|LPA2_ARATH | 1.00E-43 | Protein LOW PSII ACCUMULATION 2, chloroplastic (Precursor) |
| trEMBL | tr|C6SW92|C6SW92_SOYBN | 4.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G36710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00180 | 93777 | 95971 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.767 |
| SRR1783600 | control | 14.905 |
| SRR1783602 | moderate drought stress | 23.312 |
| SRR1811619 | moderate drought stress | 23.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.629 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.147 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.742 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.675 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.553 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.912 |
| SRR2868004 | Drought Stress (root) | 7.652 |
| SRR2967015 | Control (root) | 9.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.698 |
| SRR9715740 | Leaf | 74.249 |
| SRR9715741 | Leaf | 36.282 |
| SRR9715739 | Root | 8.469 |
| SRR9715742 | Root | 5.466 |
| SRR9715743 | Root | 5.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.192 |
| SRR8749028 | MeJA induced 9h | 36.007 |
| SRR8749029 | MeJA induced 9h | 53.065 |
| SRR8749030 | Uninduced | 11.862 |
| SRR8749031 | Uninduced | 4.226 |
| SRR8749032 | Uninduced | 12.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.392 |
| SRR8400027 | Control - Root | 13.230 |