Gene detail

Gene detail information of Glyur000179s00010712

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75220.1	2.00E-161	Major facilitator superfamily protein
NR	XP_004509267.1	0	PREDICTED: sugar transporter ERD6-like 6-like [Cicer arietinum]
COG	YP_004290515.1	1.00E-49	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q9FRL3\|ERDL6_ARATH	0	Sugar transporter ERD6-like 6
trEMBL	tr\|G7LDY1\|G7LDY1_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AET03896.1}

Sequence

Transcript Sequence

>Glyur000179s00010712.1
ACCTTACCTAACTCACGTTTTCAATAAAAGGGGAGTCCATCGTTTCCCTCGTTAGGCTATTTTGGTTTTCTTACCAGATTAAGCACAAAGGCAAAGGCCGTGAATTGTGGATGCTCCACATTTGACACCGCGCGGAAAAATCCAAAAAGACAGTGAGAGATAAACACGACACGAGAGGGTGACGACTACACTGCCACAGCACCACATGATAAACCCAACAACAACCATTCTTCCCACAATAATAATTTTATTTTACTCACTCATCACTGTTGCAGCCTGAACACATGAAATTTATTAAGCACCGTGTGTGCCCACTCGTCCGAACGCGACATTTCCCAATCTCATGCTATTAAGCGACGCTCATCACTCAATACAGCTCAGCAATATTCGAAAATCCCTCTGTTCTGTGGGACATTTTCGCAAACACCTACAAGTTGAACTGAACTGAACTGAACTGAACTTGGAAGTCGTTGCTGAAGGATGAGTTTCAGGGAAGAGAGCGGAGGGGAAGGGAGGGACCTTCAGAAACCGTTCCTCCACACGGGGAGCTGGTACAAGATGGGTTCCAGGCAATCCAGCATCATGGGGTCCAGCACTCAGGTCATGCGCGATGGCTCCGTCTCCGTCCTCTTCTGCGTTCTCATCGCCGCCTTGGGTCCCATTCAATTCGGCTTCACGTGTGGATATTCTTCTCCGACGCAGGGGGCTATAATCAGCGATCTGAAGCTCTCGGTTTCGGAGTTCTCTGTGTTTGGATCTTTATCGAATGTGGGTGCCATGGTGGGAGCTATAGCCAGTGGTCAGATAGCAGAATACATCGGTCGCAAAGGGTGTTTGTTTTGTTTTGAACTCTCATTGATGATTGCTGCGATTCCTAATATAATAGGGTGGCTCGCCATTTCTTTTGCCAAAGACTCGTCTTTTTTGTTTATGGGGAGGTTGTTGGAAGGTTTTGGCGTTGGGATCATCTCTTATGTGGTGCCTGTTTATATTGCTGAGATAGCACCTGAGAACATGAGAGGTGGCCTTGGATCAGTGAACCAGGCCAAGATGGGGATGACAGATGAGTTTGAGACTTCTTTGCAAGTGTTGCGGGGATTTGACACAGATATATCTGTTGAAGTACATGAAATTAAGAGATCTCTGGTATCACCGGGAAGAAGAGTTACAATCCGTTTTGCAGATCTCAAGAGGAAAAGATATTGGTTCCCTTTAATGGTAGGAATCGGATTACTTGTACTTCAGCAATTGAGCGGTATCAATGGAGTTTTGTTCTATTCAACTAGCATCTTTGCAAATGCAGGAATTTCATCCAGCAGTGCTGCTACAGTTGGACTTGGAGCTATTCAGGTCATAGCTACTGGAATTGCTACTTGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTTATAATATCCTCATCTTTAATGACAATTAGCCTTCTCGTCGTTTCTATAGCGTTCTATCTAGAGGGACTTGTATCAGAGGATTCACATTTATACAGCATTTTGGGAATAGTTTCTGTTGTTGGCCTTGTGGTTATGGTAATTGGGTTCTCTCTAGGGCTTGGACCAATCCCTTGGCTTATAATGTCTGAGATACTTCCGGTGAGTATAAAGGGCCTTGCTGGCAGTATAGCGACCATGGCTAATTGGCTGGTTGCATGGATAGTCACAATGACTGCAAACTTGCTTTTGACTTGGAGCAGTGGAGTCGAGTACGAGGATGTTAGGAACCTTAGGAAGCCATTCGTCAACACCAACAACAACAACAACAACGCCGGAAGTGGCTCTTCCTTTGTTGTGCTATGCGTCCTCGTCGTAGCTTTGGGTCCTATTCAATTCGGTTTCACGTGTGGCTATTCTTCACCAACGCAAGCTGAAATGATTCGAGATCTTAATCTCTCAATTTCAAGGTTTTCACTCTTTGGATCTTTATCAAACGTTGGTGCAATGGTGGGAGCAACAGTCAGTGGTCAAATAGCAGAATACTTTGGGCGTAAGGGGTCACTAATAGTCGCAGCAGTCCCAAATATACTTGGATGGCTCGCCATTTCTATAGCCAAAGACTCATCGCTTCTATTTATGGGAAGATTGTTGGAAGGTTTTGGCGTGGGAATAATCTCCTATGTGGTACCTGTTTATATAGCAGAGATATCACCTCGAACCATGAGAGGTAGCCTAGGATCTGTGAACCAGCTCTCTGTTACGATTGGGATCATGCTGGCTTATTTGTTGGGTCTTTTTTTCAACTGGAGAACGTTAGCACTGTTAGGAGTTTTTCCATGTGCACTATTAATACCCGGGTTATACTTCATTCCAGAATCTCCTAGATGGTTGGCCGAAATGGGGATGGCAGAAAGGTTTGAAGCTTCATTACAAACTTTGCGAGGACCCCAAGTTGATATTACTATGGAAGCACAAGAAATTCANGGATCTTTGGTATCGAAGAACAGAGCAGATACTATACAGTTAGCAGATCTAAAGAGGAGAAGATATTGGTTTCCTTTGATGCAACTTTCTGGTATCAACGGGGTATTTTTCTATTCTAGCAAGATCTTCTCAAGTGCAGGAATTTCATCCAGTGATGCTGCTACATTTGGACTTGGAGCCATTCAGGTTATAATGACTGGGGTTGCTACTTGGTTGGTAGACAAAAGTGGCCGAAGGATTCTTCTTATAGTATCCTCCTCTGTAATGACTTTTAGCCTGCTCCTTGTTGCTACAGCATTCTATCTGGAGGGAGTCGTGTCAAATGGTCGTTCTGACCTTCATGAAATATTGGCAATGCTCTCTGTTGCGGGACTTGTGGCTTTGGTCATTGGCTTTTCTCTAGGCATTGGACCAATCCCTTGGCTTATAATGTCTGAGGAACATTCACAATTTACGCAATTTCTTCCGCCTTCACTGTTGCTTTTGCCATGCTCTGGGTTCCCGAGACCAAGGATAGAACATTGGAAGAAATTCAGGCATCGTTTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	238003	250204	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010712.1	PF00083.19	Sugar_tr	52	190	4.40E-21
Glyur000179s00010712.1	PF00083.19	Sugar_tr	198	410	4.70E-40
Glyur000179s00010712.1	PF00083.19	Sugar_tr	444	797	2.70E-66
Glyur000179s00010712.2	PF00083.19	Sugar_tr	52	183	1.90E-24
Glyur000179s00010712.2	PF00083.19	Sugar_tr	191	403	5.80E-40
Glyur000179s00010712.2	PF00083.19	Sugar_tr	437	790	2.60E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.258
SRR1783600	control	5.155
SRR1783602	moderate drought stress	4.079
SRR1811619	moderate drought stress	4.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.194
DRR006520	Root Summer glycyrrhizin high producing strain	9.491
DRR006521	Root Winter glycyrrhizin high producing strain	7.246
DRR006522	Root Winter glycyrrhizin high producing strain	7.561
DRR006523	Root Summer glycyrrhizin low producing strain	9.567
DRR006524	Root Summer glycyrrhizin low producing strain	9.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.846

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.589
SRR2868004	Drought Stress (root)	25.089
SRR2967015	Control (root)	24.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.202
SRR9715740	Leaf	25.020
SRR9715741	Leaf	30.825
SRR9715739	Root	4.883
SRR9715742	Root	12.696
SRR9715743	Root	10.714

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.255
SRR8749028	MeJA induced 9h	7.312
SRR8749029	MeJA induced 9h	7.328
SRR8749030	Uninduced	4.207
SRR8749031	Uninduced	2.375
SRR8749032	Uninduced	3.379

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.313
SRR8400027	Control - Root	29.335