Gene detail

Gene detail information of Glyur000179s00010702

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G36630.1	Vacuolar sorting protein 39
NR	XP_004509258.1	PREDICTED: vam6/Vps39-like protein-like isoform X2 [Cicer arietinum]
trEMBL	tr\|G7LES7\|G7LES7_MEDTR	Vam6/Vps39-like protein {ECO:0000313\|EMBL:AET03930.2}

Sequence

Transcript Sequence

>Glyur000179s00010702.1
ATGGTGCACGGCGCGTACGATTCCTTCGAGCTCATCCGCGATTGCCCTTCGAAAATCGAATCCGTCGAATCGTACGGTTCGAAGATCCTCCTGGGATGCTCCGACGGCTCTCTCCTCATCTACGCGCCGAACTCCGACCGCTCGGCAGCGGCGGAGGATCTGCGGAAGGAGGGTTACNCGCTGCAGAGAAGCGTGAACGGTTTCGCGAAGAAACCCGTGGTGTCAATGCAGGTGGTGGAATCGAGAGAGCTTCTCCTCTCGCTCTCCGAGTCCATCGCGTTTTACAGGCTTCCCTCCTTCGAAACCATAGCCGTCATCACCAAGGCCAAGGGCGCCAATGCCTTCTGCTGGGACGATCGCAGAGGCTTTTTGTGCTTCGCCAGGCAAAAACGCGTCTCTATCTTCAGACACGACGACTTTGGTGTTCCTGATGTGGTGAAGTCGATGTCTTGGTGTGGTGAGAATATATGTTTGGGGATTAGAAAAGAGTATGTGATTCTGAATGCTACAAGTGGCGCAATATCTGAAGTTTTTACTTCTGGGAGGCTAGCGCCGCCTTTGGTGGTATCTCTTCCTACGGGAGAGCTTCTTCTGGGCAAGGAGAATATTGGCGTCTTTGTGAACCAAAATGGGAAAATTCGTCCAGAAGGTAGGATTTGTTGGTCAGAGGCCCCAGCAGAAGTTGTAATTCATAAGCCATATGCTATAGCACTGCTGCCTAGATTTGTGGAGATTCGATCTCTCCGAGGTTCATATCCACTGATACAAACAGTAGTTCTTCGAAATGTACGCCATCTTTGCCAAAGCAATAATTCTGTGCTTCTTGCTTTAGAAAATTCTGTACATGGCCTCTTTCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCTGCTGGTAACTTTGAAGAAGCCTTGTCATTGTGCAAGCTCCTTCCACCTGAAGATTCAAATCTTCGTGCTGCAAAGGAGGGTTCAATTCATATAAGATATGCCCACTATCTCTTTGACAATGGCAGCTATGAGGAGGCAATGGAACAGTTTCTAGCATCTCAAGTAGATATAACATATGTGCTTTCTCTATATCCATCCATTATCCTTCCAAAAACAACTATTGTTCATGAGCCTGATAAGTTGATGGNCATTTCTGGGGATGCTTTATATTTCTCCAGAGGTTCTTCGGCTATGTCAGATGATATGGAACCCTCTCCAGCATCTCATATGCCAGAATCTGATGAGAATGCAGAACTCGAGTCCAAAAAAATGAGCCATAATATGCTTATGGCTCTAATAAAATTTTTGCAGAAGAAGAGATATAGTGTTNTTGAGAAGGCCACTGCAGAGGGGACTGAGGAAGTTGTTTTAGATGCAGTTGGGGATAACTTTGCATCCTATAACAGTAATAGGTTTAAGAAAATAAACAAGGGGCGTGGTAGTATACCCATTAATTCAGGTCGGGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCATTGCTGCTTACTGGACAATCTTCTGTGGCTGAAGATTTACTGAGAGGTCTTAACTACTGTGACTTGAAAATATGTGAAGAGATACTTCAAGAAGGCAGCTATCGTGTTGCTTTAGTAGAACTTTACAAGAGCAACTCAATGCANCGAGAAGCCCTTGAACTTATTCATAAATTGGTGAAAGAGATAAAGTCTAGCCAGTCTGAGATTACACACAGGTTCAAGCCTGAGGCCATCATTGAGTACCTTAAGCTACTTTGTGAAACAGACCCCACACTTGTTTTAGAGTTCTCCACGCTTGTTCTTGAAAGCTGCCCAACNCAGACTATTGATCTCTTTCTGTCTGGAAATATTCCGGCAGATATGGTGAACTCATATCTGAAGCAACATGCTCCAGACTTGCAAGCAACATACTTGGAGCTCATACTTGCAATGAATGAGGACGCCATATCTGGAAATTTGCAAAATGAAATGGTACANATCTATCTTTCTGAAGTACTTGATTGGCATGCTGATTTAAGTTCTCAAGGGAAATGGGACGAGAAAGTTTATTCCCCCAAAAGGAAAAAATTATTGTCTGCCGTGGAGAGTACATCAGGATACAATACAGAAGATCTGCTGAAACGTCTTCCATCAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAATTGAACCAACATGAACTAGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCATATTGTGATCGGGTGTATGAATCTATGCATAAGCCTTCTGTGAAATCTCCCAGCAACATATACCTAATGCTTCTGCAAATCTATTTGAATCCACGAAGGACGACCAAGAACTATGAAAAGAGAATTACAAATATATTATCCCCCCGGAATACAACCATTCCAAAGGTTAGTTCAAAAACATTATTAAAAANTAGAAGCCGAGGATCAAAGAAAATTGCTGCAATAGAGGTTGCAGAGGACACAAAAGCTAGTTTGAGTCGCACTGACAGTGGCAGGAGTGATGCTGACACAGATGAATTTACTGAGGAAGGAGGTACTTCTATCATGCTTGATGAGGCCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATCAACGGAGCCCAGGCCCTTAAACTTCTACCAAAAGAGACTAAACTGCAGAACTTGCTTCCATTTCTTGGGCCCCTTCTGAGAAAATCTAGTGAAATGTATCGTAATTGCTCAGTGGTCAGGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAAAGATGAACTCTACAATAAGAGAAAAGAAGTTTTGAAGATTAGCAGTGATGACATGTGTTCCTTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCAGTCTACCCGAACGGAGAAACCCTCGTGCATTTTGTCTGTTTCAGAGATTCTCANAGTATGAAAGCTGTGGCCAAAGGGTCTCCATGGAGAAAACCATTTTGAAAATGGGTATTGAAAATTGATACCAATCGGTGGTTGTGTGAGCATTGCTTTGTCATGGTAAGGTGGCGGATTGTGATGAAAGCAGCACTGTAATCTATTTTCGGGAGATCAGTTCGTACTAGTTTGTAGTTGTAGCCTTGTAGGCATGATATCACTGTGAAAGGCGTGCTATGTTTCTCTTTTATTTTCGTGTAATGTAAATATTGGTTTTATATTTATGGATAA

Protein Sequence

>Glyur000179s00010702.1
MVHGAYDSFELIRDCPSKIESVESYGSKILLGCSDGSLLIYAPNSDRSAAAEDLRKEGYXLQRSVNGFAKKPVVSMQVVESRELLLSLSESIAFYRLPSFETIAVITKAKGANAFCWDDRRGFLCFARQKRVSIFRHDDFGVPDVVKSMSWCGENICLGIRKEYVILNATSGAISEVFTSGRLAPPLVVSLPTGELLLGKENIGVFVNQNGKIRPEGRICWSEAPAEVVIHKPYAIALLPRFVEIRSLRGSYPLIQTVVLRNVRHLCQSNNSVLLALENSVHGLFPVPLGAQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNGSYEEAMEQFLASQVDITYVLSLYPSIILPKTTIVHEPDKLMXISGDALYFSRGSSAMSDDMEPSPASHMPESDENAELESKKMSHNMLMALIKFLQKKRYSVXEKATAEGTEEVVLDAVGDNFASYNSNRFKKINKGRGSIPINSGREMASILDTALLQALLLTGQSSVAEDLLRGLNYCDLKICEEILQEGSYRVALVELYKSNSMXREALELIHKLVKEIKSSQSEITHRFKPEAIIEYLKLLCETDPTLVLEFSTLVLESCPTQTIDLFLSGNIPADMVNSYLKQHAPDLQATYLELILAMNEDAISGNLQNEMVXIYLSEVLDWHADLSSQGKWDEKVYSPKRKKLLSAVESTSGYNTEDLLKRLPSDALYEERAILLGKLNQHELALSLYVHKLHVPELALSYCDRVYESMHKPSVKSPSNIYLMLLQIYLNPRRTTKNYEKRITNILSPRNTTIPKVSSKTLLKXRSRGSKKIAAIEVAEDTKASLSRTDSGRSDADTDEFTEEGGTSIMLDEALDLLSRRWDRINGAQALKLLPKETKLQNLLPFLGPLLRKSSEMYRNCSVVRSLRQSENLQVKDELYNKRKEVLKISSDDMCSLCHKKIGTSVFAVYPNGETLVHFVCFRDSXSMKAVAKGSPWRKPF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	198543	205803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010702.1	PF00780.17	CNH	25	269	1.60E-25
Glyur000179s00010702.1	PF10366.4	Vps39_1	492	600	6.80E-24
Glyur000179s00010702.1	PF00637.15	Clathrin	620	750	6.40E-09
Glyur000179s00010702.1	PF10367.4	Vps39_2	860	968	4.10E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.538
SRR1783600	control	2.497
SRR1783602	moderate drought stress	1.689
SRR1811619	moderate drought stress	1.683

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.222
DRR006520	Root Summer glycyrrhizin high producing strain	2.078
DRR006521	Root Winter glycyrrhizin high producing strain	1.309
DRR006522	Root Winter glycyrrhizin high producing strain	1.259
DRR006523	Root Summer glycyrrhizin low producing strain	2.362
DRR006524	Root Summer glycyrrhizin low producing strain	2.413
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.200
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.186

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.640
SRR2868004	Drought Stress (root)	2.107
SRR2967015	Control (root)	1.991

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.006
SRR9715740	Leaf	0.370
SRR9715741	Leaf	1.252
SRR9715739	Root	0.988
SRR9715742	Root	4.256
SRR9715743	Root	3.856

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.447
SRR8749028	MeJA induced 9h	5.922
SRR8749029	MeJA induced 9h	3.885
SRR8749030	Uninduced	1.414
SRR8749031	Uninduced	0.827
SRR8749032	Uninduced	0.695

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.626
SRR8400027	Control - Root	3.738