Gene detail

Gene detail information of Glyur000179s00010696.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50660.1	0	Cytochrome P450 superfamily protein
NR	AET03943.2	0	cytochrome P450 family 90 protein [Medicago truncatula]
COG	YP_007134290.1	9.00E-60	(+)-abscisic acid 8'-hydroxylase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|O64989\|C90B1_ARATH	0	Cytochrome P450 90B1
trEMBL	tr\|G7LEU0\|G7LEU0_MEDTR	0	Cytochrome P450 family 90 protein {ECO:0000313\|EMBL:AET03943.2}

Sequence

Transcript Sequence

>Glyur000179s00010696.1
ATGTCTGACTCACACCTGACTTTCTGTTTTCTATCTTCCATTCTTGCTCTCACTACTTTGATCTTCTTCATTTTCTTCAAAAGAAAGAAAACAAGCCTTAATCTCCCCCCTGGCAAAATGGGGTGGCCCCTTCTGGGTGAAACCATTGGGTATTTGAAGCCTTACTCTGCTACCTCAATGGGACAATTCATGGAGAAACACATAGCAAGGTATGGTACAATTTACAAGTCAAAGTTGTTTGGGGAGCCAGCTATAGTGTCAGCAGATGCAGAACTGAATAGGTTCATATTGCAGAACGAAGGGAAGTTGTTCGAGTGCAGCTATCCTAGGAGCATTGGGGGAATACTTGGGAAATGGTCTATGTTGGTCTTAGTAGGGGACATGCATAGGGACATGAGGAACATATCACTCAACTTCCTTAGCTATGCTAGGCTCCGAACACATCTATTGAAAGAGGTGGAGAACCATACCCTTCTAGTTCTTAGCACGTGGAAAGAAAATTGTACATTCTCAGCTCAAGATGAAGCAAAGAAGTTCACCTTCAATTTGATGGCGAAACATATCATGAGCTTGGATCCAGGGAAACTCGAGACAGAACAACTGAAGAAAGAGTATGTCTCTTTCATGAAGGGTGTCGTATCTGCGCCTTTGAATTTGCCCGGAACTGCATACAGAAAAGCATTGAAGTCTAGGTCCACCATACTGAAGTTCATAGAGGGGAAAATGGAAGGGAGGATCAAGAGAAACCAAGAGGGAAACAAAAGCTTGGAGGAGAATGATCTTCTAAACTGGGTTCTGATGCATTCCNATCTTTCCACTGAGCAAATTCTTGACTTGATTCTGAGCTTGCTCTTTGCGGGCCATGAAACTTCATCCGTAGCTATAGCTTTAGCTATTTACTTCTTGCCGCGTTGTCCTCGAGCCATACAGCAATTAAGGGAAGAGCACAGAGAAATAGTCAGATCCAAGAAGAAAGCAGGGGAGGTCGAATTAACTTGGGATGATTATAAAAGAATGGAGTTTACTCATTGTGTTGTGAACGAAACACTTCGGTTGGGAAACGTTGTGAGGTTCCTTCACAGGAAGGCTCTCAAAGATGTTCGGTACAAAGGCAAGTATAGGACAGAGGATAGTTATGATATTCCATGTGGATGGAAAGTCCTTCCGGTGATTTCAGCGGTGCATCTGGATCCTTCACTTTTTGACCAACCTCAACACTTCAATCCATGGAGATGGCAGGAGAATAGTAAAAGTGGAAATTGCCCAAACCCGAGCAATAACTTCATGCCGTTCGGGGGCGGACCAAGGCTGTGTGCGGGATCAGAGTTAGCCAAACTTGAAATGGCTGTTTTCATTCACCATCTCATCCTCAATTACCACTGGGAGCTGGTCGATGTTGATGAACCTGTTGCATACCCTTTTGTCGATTTTCCCAAAGGTCTATCCATTAAAGTCCAAAGCCACTCCTCCTTAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	169013	174920	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP90B1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09587	CYP90B1, DWF4	EC:1.14.13.-	Brassinosteroid biosynthesis	map00905

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010696.1	PF00067.17	p450	36	469	5.20E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.433
SRR1783600	control	0.393
SRR1783602	moderate drought stress	0.511
SRR1811619	moderate drought stress	0.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.632
DRR006520	Root Summer glycyrrhizin high producing strain	0.468
DRR006521	Root Winter glycyrrhizin high producing strain	0.150
DRR006522	Root Winter glycyrrhizin high producing strain	0.069
DRR006523	Root Summer glycyrrhizin low producing strain	0.257
DRR006524	Root Summer glycyrrhizin low producing strain	0.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.814
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.191
SRR2868004	Drought Stress (root)	0.559
SRR2967015	Control (root)	0.308

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.846
SRR9715740	Leaf	0.328
SRR9715741	Leaf	0.371
SRR9715739	Root	0.033
SRR9715742	Root	0.690
SRR9715743	Root	0.721

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.128
SRR8749028	MeJA induced 9h	0.108
SRR8749029	MeJA induced 9h	0.127
SRR8749030	Uninduced	0.160
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.321
SRR8400027	Control - Root	1.426