Gene detail

Gene detail information of Glyur000179s00010692

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50670.1	2.00E-91	U1 small nuclear ribonucleoprotein-70K
NR	XP_003517230.1	0	PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like isoform X1 [Glycine max]
COG	YP_004346183.1	6.00E-11	RNP-1 like RNA-binding protein [Fluviicola taffensis DSM 16823]
Swissprot	tr\|Q42404\|RU17_ARATH	8.00E-163	U1 small nuclear ribonucleoprotein 70 kDa
trEMBL	tr\|I1J8V4\|I1J8V4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G38120.1}

Sequence

Transcript Sequence

>Glyur000179s00010692.1
CCACACCTCCAATCCAAAACGTTTTCCGTGCTTGAAAGCCGCATTTCACACTTTCACTATAAATACCTGGCAGGTCACGATCGAGAACCCGCTGGCGCTCATCGCTGGGATACAAATCGGATCTCGTGAACTCGTTAGAATAGAAAATCGATCCATTCCATTCGCTCGAATCTAAGAATCTCATAATCTCAGCTCAGCTTCACCACCATGGGAGACTTCAACAACGATCCTCTCATGCGCAACCAAAACTCCGCCGTCCAGGCCCGTGCCAAAGCCCAGAACCGCGCTAACGTCCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACTGGTCTCACAGCGAACCTGTTGAAGCTTTTTGAGCCTAGGCCTCCCTTGGAGTATAAACCTCCTCCTGAGAAAAGAAAATGTCCACCGCTAACAGGGATGGCGCAATTTGTGAGTAAGTTCGCTGAGCCTGGTGATCCAGAATATGCTCCGCCCAAACCTGTAGTTGAAACTCCGGTACAAAGAAGGGCAAGAATACACAAGTTAAGACTAGAGAAGGGAGCAGCGAAGGCTGCTGAGGAGCTTGAGAAATATGATCCAAACAATGACCCAAATATATCAGGAGATCCATACAAGACATTGTTTGTGGCCAGACTCAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTTCGATTGGTTACTGATACGGAGACAAACAAGCCCAAGGGTTATGCATTCATTGAATACCTACACACACGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCAAATTGGCGACCCCGTCGTCTAGGTGGTGGGCTTGGTACTACTAGAGTGGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCAGGACCTTCTCGTTCTGAAGAACCCAGAGTGCGGGAGGATCGTCACGTTGATCNGGACAGGGAAAAGTCACGTGAAAGAGGTAAGGACAGAGATAGAGAACGAGAGCGATCACGTGAACGTTCTAGTGATAGGGCCAGGGATCGTGATCATAGAGATGATAGGCACCACAGAGACCGGGATAGGAATAGGGACCGAGACAGGGAAAGGGGGAGAGAGAGAGATCGCGGACGTGATCGAGATAGAGCACGTGGTCGTGACCGTGATCGTGAGAGAGATTGTGATCGAGAACGTGATCGTCATCGAGAAAGGGATAGGGATTATGAAGTTGGGGAAACTGATCGGGGACGATCACATGATCGGGGGCGTTCACATGGTAGGGAGACTGATTACAATCATGTTGAATCTAAACATGNGAAGGCACATGAACCTGAAGATGATCCTGGGTGGTACAACCAACCTGTGCACGGACATAGGCATGCAGATCCTGAACATGATCCTGACCACTATGAGCATCGCCGAGGAAGGGGGCAGTATGATGATGGAGATGACCATGGTGGCCATTACAATCATTATCCTGATCATGATAGGATGGAAGATGACTGTCACACTGAACGGGCAACATCTGAATCCCGTGAAAAGGAGATAAATCGTGATATGGACCGTGAATATCGTCGCACAGAGAGTTATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	140848	146103	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010692.1	PF12220.3	U1snRNP70_N	41	131	1.70E-20
Glyur000179s00010692.1	PF00076.17	RRM_1	141	210	1.30E-18
Glyur000179s00010692.2	PF12220.3	U1snRNP70_N	41	131	1.70E-20
Glyur000179s00010692.2	PF00076.17	RRM_1	141	210	1.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	70.066
SRR1783600	control	70.475
SRR1783602	moderate drought stress	171.894
SRR1811619	moderate drought stress	171.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.380
DRR006520	Root Summer glycyrrhizin high producing strain	56.492
DRR006521	Root Winter glycyrrhizin high producing strain	66.339
DRR006522	Root Winter glycyrrhizin high producing strain	65.613
DRR006523	Root Summer glycyrrhizin low producing strain	54.423
DRR006524	Root Summer glycyrrhizin low producing strain	53.682
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.196
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.045
SRR2868004	Drought Stress (root)	95.737
SRR2967015	Control (root)	104.245

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.008
SRR9715740	Leaf	18.918
SRR9715741	Leaf	36.242
SRR9715739	Root	7.121
SRR9715742	Root	21.638
SRR9715743	Root	15.979

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.278
SRR8749028	MeJA induced 9h	82.026
SRR8749029	MeJA induced 9h	43.583
SRR8749030	Uninduced	140.089
SRR8749031	Uninduced	153.478
SRR8749032	Uninduced	113.531

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	95.186
SRR8400027	Control - Root	84.240