Gene detail

Gene detail information of Glyur000179s00010689

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36670.1	8.00E-167	Major facilitator superfamily protein
NR	XP_004509296.1	0	PREDICTED: probable polyol transporter 3-like [Cicer arietinum]
COG	YP_004290515.1	3.00E-76	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q8GXR2\|PLT6_ARATH	0	Probable polyol transporter 6
trEMBL	tr\|G7LEU7\|G7LEU7_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AET03950.1}

Sequence

Transcript Sequence

>Glyur000179s00010689.1
ATGATACTGGAGCAGGGTAGCAAAGAAGACCAGGCGACGATGTTAAACAAATATGCCTTTGCNTGTGCAGTAGTCGCTTCTATGGTTTCCATCATATCTGGTTATGATATTGGAATCAGCGATACCCAACAAGAAATTCTAGCGGGAATCTTAAATCTATGCGCATTGGTGGGANCCTTGGCTGCTGGAAGAACCTCTGATTACATTGGTCGCCGCTACACAATCTTCTTAGCCTCTGTCCTCTTCATGCTCGGTGCAGTTCTCATGGGGTATGGCCCAAACTATGCAATTCTAATGGTTGGAAGGTGTGTTGGTGGTGTGGGTGTGGGCTTTGCTCTTATGATAGCCCCAGTTTACTCTGCAGAGATTTCCTCAGCCTCTTCCAGAGGTTTTCTAACCTCCTTGCCTGAGCTTTGTATTGGTATTGGAATCTTACTAGGTTACATCTCAAACTACTTCTTGGGGAAATTGACTTTGAAACTTGGATGGAGATTGATGCTTGGTATTGCAGCATTTCCTTCACTTGCCTTGGCTTTGGGCATTCTAACAATGCCAGAGTCTCCAAGGTGGCTAGTGATGCAAGGTCGTTTGGGAAACGCCAAGAAGGTCCTATTGCAAGTTTCCAATACCCCACAAGAGGCTGAACTTCGTTTCAGGGATATAAAAGTTGCTGCTGGTTTAGANGAGAATTGCAATGATGAGATAGTGAAGCTCCCTCACAAGTCTCATCACAATGGTGAAGGGGTTTGGAAAGAGTTGCTTTTAAGGCCCACGCCTTCCGTGCGCTGGATGCTGATTGCAGCAGTTGGGATTCACTTTTTCGAGCATGCAACTGGCATTGAAGCTGTGATGTTATATAGTCCAAGGATTTTCAAGAAAGCCGGTGTTACAAGCAAGGAGAAGCTCTTGCTTGCAACAGTTGGAGTTGGCCTTACAAAGATTGTGTTTTTGGTAATTGCCTTGTTCTTGCTTGACAAGGTTGGTAGAAGACGCCTCTTGCAAATAAGCACTGGGGGAATGGTTTGTGGCCTTACACTATTGGGTTTCAGCTTGACCATGGCGGATCATTCCAAGGAAAAGCTCTTGTGGGCCTTGAGCCTTAGCATTGTGGCAACATACTCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTATCACATGGGTCTATAGTTCAGAGATATTCCCTNTGCGTTTGAGAGCACAAGGAGCAAGCATAGGGGTTGCTGTGAACAGGACCATGAATGCTGCTGTTTCCATGAGTTTTATCTCAATCTATAGAGCAATCACAATAGGTGGGAGCTTTTTCATGTTTGCTGGTATCTCTGTGTTAGCTTGGGTGTTCTTTTATGCTTTCCTTCCTGAAACCAAGGGCAAGGCCTTGGAGGAGATGGAGATGGTCTTCACCAAAAAATCCAGTGGTAAAAATGTAGCAACAGAGACTGATCCAAGACAGAATGCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	122823	124673	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010689.1	PF00083.19	Sugar_tr	24	468	1.60E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.038
SRR1783602	moderate drought stress	0.044
SRR1811619	moderate drought stress	0.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.147
DRR006520	Root Summer glycyrrhizin high producing strain	0.073
DRR006521	Root Winter glycyrrhizin high producing strain	0.407
DRR006522	Root Winter glycyrrhizin high producing strain	0.299
DRR006523	Root Summer glycyrrhizin low producing strain	0.371
DRR006524	Root Summer glycyrrhizin low producing strain	0.359
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.795
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.296
SRR2868004	Drought Stress (root)	0.126
SRR2967015	Control (root)	0.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.404
SRR9715740	Leaf	1.834
SRR9715741	Leaf	2.229
SRR9715739	Root	0.271
SRR9715742	Root	3.695
SRR9715743	Root	2.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.346
SRR8749028	MeJA induced 9h	0.528
SRR8749029	MeJA induced 9h	0.447
SRR8749030	Uninduced	1.486
SRR8749031	Uninduced	1.637
SRR8749032	Uninduced	3.660

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.011
SRR8400027	Control - Root	0.273