Gene detail

Gene detail information of Glyur000179s00010685.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36730.1	3.00E-48	G-box binding factor 1
NR	NP_001240983.1	7.02E-160	bZIP transcription factor bZIP115 [Glycine max]
Swissprot	tr\|P42774\|GBF1_ARATH	3.00E-80	G-box-binding factor 1
trEMBL	tr\|C6T9L6\|C6T9L6_SOYBN	3.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G06550.4}

Sequence

Transcript Sequence

>Glyur000179s00010685.1
CCAAAACTTCCAATTTCCCAAAGTCAGTCTTCACATTTCAACAACACACAATACATACACACTTGCCATTCCAAATCCGAATCCCCTTTTGATTGATTACTCAGCAGTAAGTACTGCACACGCTTGTAGTTGTACCCACATCCACATCCACATCCACATCCACGTCCACAACACAAGACAAAATCCACAAGGATTGTGGAAAAATAACAAACATTTTACTATATTACTGTTCTACCTTAATTGGTGGAAGCTACAAAAAACCTCAAACACAAACACGAGGAGTTTGGTTTGAGTAGTTTCGGTAGTAGCTACGATACAACTACAACAAGTGAGTGGTATTGTGTAGACTTTGAAAAACCACACCTTGTCCCATCCCAGTTGGACTTCCACCTCACCCCTTTTTCTTAACGCCATGAGAACAGTACGTGTTTTCTGGCATGAGTAGCTGTTCAAATTGATCTTAAGACCTCCACAGATATCAGTGCTTGATCATAGGCCTTTCTGTTTGGTGGTACTGAAGGGGAAGCGTTTCTGAGCTGATCTGTATGGGGACTGGGGAAGAGAGCACAGCTAAACCTTCTAAATCATCGTCGTCAACTCAGGAGNTGCCAGCGGCACCATTGTATCCAGATTGGTCAAGCTCCATGCAGGCTTATTATGCTCCTGGAGCCACTCCGCCTCCCTTTTTTGCGTCAACCNTTGCTTCACCAACTCCCCATCCCTATATGTGGGGAAGCCAGCATCCTTTAATGCCGCCNTATGGGACTCCAGTCCCATATCCAGCTTTATACCCTCCTGGGAATATCTATGCTCATCCTAGCATGGCAGTGACTTCAAGTGCAATGCCGCAAACTACAGAGTTTNAAGGGAAGGGACCTGATGGAAAAGATCGGGATTCATCCAAAAAGTCAAAGGGAACTTCTGCAAATACATGTGCCAAAGCAGGAGAGAGTGGAAAGACAGGCTCAGAAAGTGGTTCAGAGGGTTCATCAAATGCCAGTGATGAGGATACTAACCAACAGGAATCAGCTAGAAACAAGAAGGGAAGCTTTGACCAGATGCTTGTTGAGGGAGCCAATGCACAGAACAATTCTGTGCCTGGAAAACCTGTTGTCTCNGTGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCATCTTCTGCCGGCGCCGAAGCCGCAAAAATGAGACATAATCAATCTGGTGCCCCAGGAGCTGTTGCTCCTTCAGCCATGATGGGACGTGAAGTTGCACTTGGTGAACAATGGATACAAGCTGAGTGTGAGGAGTTACAAAAGAGGGTGGAGACACTGGGAAGTGAGAACCGAAATCTTAGAGAAGAGCTTCAGAAACTATCTGAAGAATGCGAGAAGCTTGCATCTGAAAACAATTCTATCAAGGAAGAATTGGAACGGNTGTGTGGGCCAGAAGCAGTTGCTAACCTTGGATGAAACAGCAGTGTCTGTCTTTGGTGGCAATAGCAAAAATTGATAGACTCTTTGATTAAGACGAATCTGCAACTGGAAATTTTCTTATCAGTGGCCCGATCTCTTAATTGAGGATAGGATATAATGTTTATTTTCTTCTTGTTTTACTAATTTATACCATTAACCTTCAATTGTAATTGCCCTTATGATTTACACGGCATTTGTTGTAATATTTACCAATGCGGGAGAATAGAAAATGTAGGCTACTGAAGCACTGCTGTTTAGAATTTAGTTTTTTTTTTTTTTTTTNGCAACTGATGTTGAGAATCCAACTTCAACTTTCCAATTTTTCACTACCTTCTGTGTTGACTGCGGAGTCATTTTTTTCATTCTCTCTGAGGNACTACCTACCATTGGGTATTGTGAATCAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	99589	104857	+

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010685.1	PF07777.6	MFMR	1	159	3.70E-46
Glyur000179s00010685.1	PF00170.16	bZIP_1	245	283	2.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.289
SRR1783600	control	9.592
SRR1783602	moderate drought stress	18.909
SRR1811619	moderate drought stress	18.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.965
DRR006520	Root Summer glycyrrhizin high producing strain	13.979
DRR006521	Root Winter glycyrrhizin high producing strain	10.204
DRR006522	Root Winter glycyrrhizin high producing strain	9.796
DRR006523	Root Summer glycyrrhizin low producing strain	17.152
DRR006524	Root Summer glycyrrhizin low producing strain	17.122
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.438
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.523
SRR2868004	Drought Stress (root)	24.473
SRR2967015	Control (root)	27.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.860
SRR9715740	Leaf	36.328
SRR9715741	Leaf	47.450
SRR9715739	Root	2.934
SRR9715742	Root	12.470
SRR9715743	Root	9.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.450
SRR8749028	MeJA induced 9h	36.858
SRR8749029	MeJA induced 9h	44.734
SRR8749030	Uninduced	28.824
SRR8749031	Uninduced	19.516
SRR8749032	Uninduced	23.953

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.032
SRR8400027	Control - Root	18.841