Gene detail

Gene detail information of Glyur000179s00010680.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36810.1	7.00E-118	geranylgeranyl pyrophosphate synthase 1
NR	XP_004509239.1	0	PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Cicer arietinum]
COG	YP_007133900.1	1.00E-126	Farnesyltranstransferase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q94ID7\|GGPPS_HEVBR	0	Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|D6Q1T4\|D6Q1T4_MEDSA	0	Geranylgeranyl-diphosphate synthase {ECO:0000313\|EMBL:ADG01841.1}

Sequence

Transcript Sequence

>Glyur000179s00010680.1
ATGAATGCCGTGAATCTCAACACATGGGCACTCCCAGGTTTCATGTTCAACCAAACCACCAGATCCAGATCCCCATCTTTTTATCTCTTCCAACAAGGCCTCACAAGGTCACCCATTTCACCCGTCACCTCTACAAAACCGCAAAGGCACCAACTTTCTTNTTCTCCTGTTGTTTCGGTTTCTGCGGTGCTCACCAAAGAGGAAACGCTGGAGGCCGAAGAGAAACCCACCTTCAATTTCAAGTCCTACATGCTGGAGAAGGCGAGTAGGGTCAACCAGGCCCTCGACGACGCCGTTTCGCTCCGCGAGCCCCTGAGGGTGCACGAGGCCATGCGGTACTCCCTCCTCGCCGGCGGGAAGAGGGTCCGGCCGGTTCTGTGCTTGGCGGCGTGCGACCTCGTCGGCGGCACCGAGTCCATGGCGATGCCGTCGGCGTGCGCCATCGAGATGATCCACACCATGTCGCTCATCCACGACGACCTACCCTGCATGGACAACGACGACCTCCGGCGAGGGAAACCGACGAACCACAAGGTGTTCGGCGAGGACGTGGCGGTCCTCGCCGGCGACGCACTCCTCGCCTTCGCCTTCGAGCACATCGCCGTCTCCACGGCCGGCGTTCCGCTGGCGAGGGTGGTCCGTTCGATCGGCGAGCTCGCTAGGTCCATCGGCTCCGAGGGACTCGTCGCCGGCCAGGTCGTCGACATCGACTCCGAGGGGCTTTCCGACGTGGGACTCGAGAGGCTCGAGTTCATTCACCTTCACAAGACCGCGGCTCTTCTGGAAGGTGCCGTTGTTCTTGGCGCCATTCTCGGTGGTGGTTCCGATGAAGACGTGGAGAAGTTGAGGAAGTTCGCGAGGTACATTGGGTTGTTGTTTCAGGTTGTTGATGATATCCTAGATGTTACAATGTCTTCACAGGAATTGGGAAAGACCGCAGGGAANGACTTGGTGGCTGATAAGGTTACTTACCCTAAGCTATTGGGGATAGAGAAAAGCAAGGAGTTTGCTGGGAAGTTGAACCGTGATGCACAGGATCAGCTCTCTGGGTTTGATCCTTATAAGGCTGCTCCTTTGATTGCTTTGGCCAATTACATTGCTTACAGGCAAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	74428	75543	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13789	GGPS	EC:2.5.1.1 2.5.1.10 2.5.1.29	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0008299 isoprenoid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010680.1	PF00348.12	polyprenyl_synt	108	350	5.00E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.586
SRR1783600	control	65.204
SRR1783602	moderate drought stress	38.973
SRR1811619	moderate drought stress	37.913

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.696
DRR006520	Root Summer glycyrrhizin high producing strain	46.760
DRR006521	Root Winter glycyrrhizin high producing strain	15.590
DRR006522	Root Winter glycyrrhizin high producing strain	11.774
DRR006523	Root Summer glycyrrhizin low producing strain	50.211
DRR006524	Root Summer glycyrrhizin low producing strain	47.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	255.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	206.350

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.514
SRR2868004	Drought Stress (root)	55.042
SRR2967015	Control (root)	44.447

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	289.361
SRR9715740	Leaf	325.453
SRR9715741	Leaf	273.333
SRR9715739	Root	80.600
SRR9715742	Root	62.894
SRR9715743	Root	68.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.442
SRR8749028	MeJA induced 9h	14.141
SRR8749029	MeJA induced 9h	13.016
SRR8749030	Uninduced	1.453
SRR8749031	Uninduced	0.370
SRR8749032	Uninduced	3.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.487
SRR8400027	Control - Root	71.688