Gene detail

Gene detail information of Glyur000179s00010679

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34320.1	2.00E-80	Protein of unknown function (DUF677)
NR	XP_003629491.1	0	hypothetical protein MTR_8g078100 [Medicago truncatula]
Swissprot	tr\|Q56XQ0\|U496I_ARATH	6.00E-130	UPF0496 protein At2g18630
trEMBL	tr\|G7LEW4\|G7LEW4_MEDTR	0	UPF0496 plant-like protein {ECO:0000313\|EMBL:AET03967.1}

Sequence

Transcript Sequence

>Glyur000179s00010679.1
CCCAAAACATATACACCACCAGTTTTTACCGAAACAGTGACAAACGTGTGAAGACATTGCCGNACTATTCTGTGATTTGCTCTCTCATTTCCTTGCTTTGACTTTGGTAGTTTGGTACCTTCNCTGCAGCTTCGCAAGCCAGTGAATGAAGCCACTTTCCCCCTTAATCACATACACTGCCTAGACCAGGCACAACACAATCTTAACATCTGAATAGCACTTATCCTCTTCCAAATCAAGTCTTGAATTAAAGCAATTTCTTTCTATTTTTTGCTATGCATCGCAATTTTCCTTCAATAGGGCATCAATCTTCATCTGGGTCTTAGCTATTGGGCTGCTCTCGTGGGAAAGGAATCCGAGTGAGTGTAACCAACATATTCCTGAATCTTCAGCTGAAACCCCAGCTATCAAGATGGGTGGGCAATCCAGCAAGATGGCTAGTGCTAGTGATGCCCCAACATCCTTCCAAATGGGTACCCATTCCCTGTATGCATCTGATTTGANCTCCTACGAAGCTGCATGTGTGAAAGATCCAAACTTGCAATCTTTTGATGCCAACATTAAAGAGCACACCAACAGGGTGATTAGTTCCCTTGCTAATGGGGTTGAGGTTCGTTCCTTATCTTTTGACACGCTGAGAGAAGTGACCGATAGCCTACTNGAGATGAACCAGGAAGTAGTCAAAGTTATTTTGGATTGCAAGAGAGACATATGGGGCAACAAGGAATTGTTCTCCTTGGTGAATGACTATTTTGAAAATAGCCTCCAGACATTGGAATTCTGCAATTCCCTTGAGAAATGCTTGAGGCGAGCGCGCGAGAAACAAGTGATGGTGAAGTCGGTAATTAACCACTTTGAAGAAGAGGTGCAACATGGGCTTGAAGGGGGAACTTGTGTGAAGACATTGCAAGAGCTCAGGAATTTTAAGGATGCTGGGGACCCCTTTAGTGAAGAGTTTTACTTGTTGCTTCGATCGGTTCATACACAGCAGGCATCCATGTTGCAGAAGTTGCAAATCAGNAAGAGGAAGCTTGACAAGAAATTGAAATCCCTCAAGACATGGAAGAGGGTGTCAAGTGCCATTTTTGTGGCTGCTTTTGTTTCTGTGTTGATTTTCTCAGTGGTAGCAGCTTCTATTGCTGCACCACCCGTTGTGACTGCNTTGGCTGCTGCATTGGCTGTTCCAATAGGGTCAGTAGGGAAATGGTGCAACTCACTCTTTAAGGGCTATGAGAAGGCTCTAAAGAGACAAAGGCAAGTAATCAGCTCAATGGAGGTTGGTACTTACATTACNTTGAAGGAGTTGGACAACATTCGTTTGCTTGCCAACAAATTGGAAGTACAGCTTGAACCATTATTGCAGACTGCTGATTTTGCNCTCAGAAATGAAGATGTTATAAAACTCGCGATTGACGAGATTAAGAAGAATATAGAAACCTTTTCGGAGACATTGGACACTTTAAGTGCGCGTGCTGATAAATGTAGTCGACAGATAAGGAGAGCAAGGAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	66489	68304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010679.1	PF05055.7	DUF677	43	365	6.10E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.122
SRR1783600	control	13.410
SRR1783602	moderate drought stress	9.482
SRR1811619	moderate drought stress	9.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.943
DRR006520	Root Summer glycyrrhizin high producing strain	44.044
DRR006521	Root Winter glycyrrhizin high producing strain	7.212
DRR006522	Root Winter glycyrrhizin high producing strain	6.824
DRR006523	Root Summer glycyrrhizin low producing strain	54.049
DRR006524	Root Summer glycyrrhizin low producing strain	56.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.096
SRR2868004	Drought Stress (root)	45.835
SRR2967015	Control (root)	62.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.070
SRR9715740	Leaf	81.452
SRR9715741	Leaf	76.179
SRR9715739	Root	23.051
SRR9715742	Root	48.793
SRR9715743	Root	44.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	62.362
SRR8749028	MeJA induced 9h	58.501
SRR8749029	MeJA induced 9h	47.212
SRR8749030	Uninduced	94.148
SRR8749031	Uninduced	48.869
SRR8749032	Uninduced	42.008

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.094
SRR8400027	Control - Root	37.325