Gene detail information of Glyur000179s00010677 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36830.1 | 1.00E-80 | GNS1/SUR4 membrane protein family |
| NR | XP_003629499.1 | 1.56E-157 | hypothetical protein MTR_8g078200 [Medicago truncatula] |
| Swissprot | tr|Q9SYY4|ELO3L_ARATH | 3.00E-130 | Elongation of fatty acids protein 3-like |
| trEMBL | tr|G7LFI8|G7LFI8_MEDTR | 6.00E-158 | GNS1/SUR4 membrane family protein {ECO:0000313|EMBL:AET03975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00179 | 40187 | 41107 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000179s00010677.1 | PF01151.13 | ELO | 35 | 280 | 6.00E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 148.549 |
| SRR1783600 | control | 148.836 |
| SRR1783602 | moderate drought stress | 231.798 |
| SRR1811619 | moderate drought stress | 229.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 87.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 87.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.537 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.802 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.322 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.030 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.276 |
| SRR2868004 | Drought Stress (root) | 10.319 |
| SRR2967015 | Control (root) | 9.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.929 |
| SRR9715740 | Leaf | 26.036 |
| SRR9715741 | Leaf | 26.398 |
| SRR9715739 | Root | 224.003 |
| SRR9715742 | Root | 133.020 |
| SRR9715743 | Root | 149.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.273 |
| SRR8749028 | MeJA induced 9h | 23.902 |
| SRR8749029 | MeJA induced 9h | 25.708 |
| SRR8749030 | Uninduced | 23.023 |
| SRR8749031 | Uninduced | 6.106 |
| SRR8749032 | Uninduced | 15.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.600 |
| SRR8400027 | Control - Root | 72.113 |