Gene detail

Gene detail information of Glyur000179s00010673

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50760.1	7.00E-131	galacturonosyltransferase-like 2
NR	XP_004509235.1	0	PREDICTED: probable galacturonosyltransferase-like 1-like [Cicer arietinum]
COG	YP_007062961.1	3.00E-23	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q9S7G2\|GATL2_ARATH	7.00E-174	Probable galacturonosyltransferase-like 2
trEMBL	tr\|G7LFJ2\|G7LFJ2_MEDTR	0	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:AET03979.1}

Sequence

Transcript Sequence

>Glyur000179s00010673.1
ATGGCTCCTTCTTCCTTCATTCTCGCATTCTCCTGTGTCTTTCTCCTCCTCTTTTTCTCCACACACACCTCCTGCACCACACCCGAACGCTTCAAGGAAGCACCGAAATTCTACAACTCCCCAACCTGCGCCACCATTGGCAGCAGCCAGAATCACACTCACACGTGCTCAACCGACGCTATACACGTGGCAATGACTCTCGACGTGTCGTACCTCCGCGGCTCCATGGCGGCAGTCCTCTCCGTTCTCCAACACTCCTCGTGTCCAGAAAACATCTTCTTCCACTTTGTCTCCGCCGCCTCGAAACCTGCGAACATCCTCAACCGCCCCATAACCGACTCCTTCCCCTACTTGAAATTCCAAATCTACCCCTTCGACGACGGCACCGTCGCCGGTCTCATCTCAACCTCCATCCGCTCCGCCCTCGACTGCCCCCTCAACTANGCCCGCACCTATCTCGCCGACCTCCTCCCTCCCTGCGTCACCAGAGTCGTCTACCTCGACTCAGACTTGGTCCTCGTCGACGACATTGCCAAGCTCGCCGCCACCCCTCTCCGATCCGGCACAGTCCTCGCCGCCCCCGAGTACTGCGGCGCCAACTTCACCACCTACTTCACGCCGTCGTTTTGGTCCAACCCTTCTCTTTCCCTCACCTTCGCGGAACGAAGGCCATGCTACTTCAACACCGGCGTCATGGTCATCGACCTCGGGCGGTGGCGCGCCGGCGACTACACCACCGTGATCCGGGAGTGGATGGAGCTCCAGAAGAGAATGCGGATCTACGAGCTTGGATCTTTGCCGCCGTTTTTGTTGGTTTTCGCCGGGAGGATTACGCCNGTGGATCACCGGTGGAACCAGCACGGGCTCGGTGGCGATAACTTCCGCGGGCTTTGCCGGGACCTGCATCCGGGCCCGGTGAGCCTGCTGCATTGGAGTGGGAAGGGGAAGCCGTGGGCCAGGCTCGACGCTAACAGGCCTTGCCCTTTGGATGCGTTGTGGGCTCCCTATGATCTCCTCAAGACTCCTTTTGCTCTTGAGGCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00179	17933	18976	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000179s00010673.1	PF01501.15	Glyco_transf_8	62	321	5.20E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.711
SRR1783600	control	4.424
SRR1783602	moderate drought stress	4.262
SRR1811619	moderate drought stress	4.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.634
DRR006520	Root Summer glycyrrhizin high producing strain	5.412
DRR006521	Root Winter glycyrrhizin high producing strain	7.626
DRR006522	Root Winter glycyrrhizin high producing strain	7.499
DRR006523	Root Summer glycyrrhizin low producing strain	2.962
DRR006524	Root Summer glycyrrhizin low producing strain	3.690
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.623
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.666
SRR2868004	Drought Stress (root)	4.918
SRR2967015	Control (root)	6.225

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.474
SRR9715740	Leaf	0.484
SRR9715741	Leaf	0.432
SRR9715739	Root	2.040
SRR9715742	Root	2.482
SRR9715743	Root	2.419

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.718
SRR8749028	MeJA induced 9h	5.834
SRR8749029	MeJA induced 9h	5.036
SRR8749030	Uninduced	1.709
SRR8749031	Uninduced	0.931
SRR8749032	Uninduced	2.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.853
SRR8400027	Control - Root	4.785