Gene detail information of Glyur000179s00010670 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50770.1 | 7.00E-27 | calmodulin-like 41 |
| NR | XP_007156010.1 | 4.58E-60 | hypothetical protein PHAVU_003G251000g [Phaseolus vulgaris] |
| Swissprot | tr|Q8L3R2|CML41_ARATH | 7.00E-39 | Probable calcium-binding protein CML41 |
| trEMBL | tr|V7CCX5|V7CCX5_PHAVU | 2.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:ESW28004.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00179 | 4183 | 5329 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000179s00010670.1 | PF13499.1 | EF-hand_7 | 70 | 130 | 3.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.809 |
| SRR1783600 | control | 44.829 |
| SRR1783602 | moderate drought stress | 37.017 |
| SRR1811619 | moderate drought stress | 37.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 96.877 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.716 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.855 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.142 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.781 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.056 |
| SRR2868004 | Drought Stress (root) | 57.559 |
| SRR2967015 | Control (root) | 62.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.316 |
| SRR9715740 | Leaf | 112.192 |
| SRR9715741 | Leaf | 92.149 |
| SRR9715739 | Root | 63.899 |
| SRR9715742 | Root | 90.601 |
| SRR9715743 | Root | 83.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 142.107 |
| SRR8749028 | MeJA induced 9h | 241.826 |
| SRR8749029 | MeJA induced 9h | 241.324 |
| SRR8749030 | Uninduced | 238.506 |
| SRR8749031 | Uninduced | 283.411 |
| SRR8749032 | Uninduced | 262.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.689 |
| SRR8400027 | Control - Root | 38.858 |