Gene detail

Gene detail information of Glyur000178s00013231.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G06050.3	6.00E-102	oxophytodienoate-reductase 3
NR	KEH32448.1	8.05E-149	12-oxophytodienoate reductase-like protein [Medicago truncatula]
COG	YP_722736.1	3.00E-73	NADH:flavin oxidoreductase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9FEW9\|OPR3_SOLLC	1.00E-133	12-oxophytodienoate reductase 3
trEMBL	tr\|A0A072UTR0\|A0A072UTR0_MEDTR	3.00E-149	12-oxophytodienoate reductase-like protein {ECO:0000313\|EMBL:KEH32448.1}

Sequence

Transcript Sequence

>Glyur000178s00013231.1
TGTTTTCTTACATAGAGGACTTGTTATTTTGGTGGGTTTGATGCAGGTTTCCCCATGTACCGGGAATATACTCAGAGGAACAAGTGGAGGCATGGAAACCTGTAGTGGATGCTGTGCATGCCAAAGGCAGCATTTTCTTTTGTCAACTGTGGCATGTTGGTCGTGCATCTCATCCAGTGTATCAGCCTGGTGGGGCCGCGCCAATTTCGTCCACCAACAAACCCATTTCAGATAGGTGGAAAATTACGATGCCCGATGGTTCCCATGCCCTATACCCTGAGCCTCGGGCACTTACCACTTCTGAGATACCTGAAATTGTCTACCAATATCAGCAATCAGCCATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGGGCACATGGGTATCTNATTGATCAATTCTTGAAGGAGGATATCAATGATCGAACAGATGAATATGGTGGGTCACTTGAAAACAGGTGCAGGTTCTTAATTGAGGTGGTTAGGGCTGTTGTTTCTGCAATTGGAGCAGAAAGGGTTGCTGTGAGAATCTCACCAGCAATTGATCACATTGATGCCACTGACTCTGACCCACTTGGGTTAGGCTTAGCAGTGGTTGAGAGACTCAACAAACTCCAGAAAGAGCTTGGCAGAAAACTCGCATATCTCCATGTTACTCAGCCTCGATTTGTAGCTTATTTGAAAAATGATCCTTCAAGCAGAGAAGAAGAAGAAGCTCATTTGATGAGGAACCTGAGAAAAGCTTATGAGGGAACATTCATGAGCAGTGGTGGATACACNAGGGAGTTGGGAATGGAAGCAGTAGCACAAGGCGATGTTGACTTGGTATCATATGGCCGTCTGTTCATCTCCAATCCAGATTTGGTCTTAAGGTTTAAGCTCAATGCACCTCTAACCAAGTACAACAGGGAAACGTTTTACTCACATGATCCTGTTATAGGCTACACNGATTATCCCTTTCTAAGTGAAGGAGATGNGACTATAAAGAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	278221	279577	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05894	OPR	EC:1.3.1.42	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013231.1	PF00724.15	Oxidored_FMN	11	218	8.30E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.005
SRR1783600	control	1.226
SRR1783602	moderate drought stress	1.577
SRR1811619	moderate drought stress	1.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.258
DRR006520	Root Summer glycyrrhizin high producing strain	12.546
DRR006521	Root Winter glycyrrhizin high producing strain	2.986
DRR006522	Root Winter glycyrrhizin high producing strain	3.501
DRR006523	Root Summer glycyrrhizin low producing strain	8.482
DRR006524	Root Summer glycyrrhizin low producing strain	9.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.481
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.981

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.415
SRR2868004	Drought Stress (root)	151.178
SRR2967015	Control (root)	37.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	174.900
SRR9715740	Leaf	53.396
SRR9715741	Leaf	246.086
SRR9715739	Root	4.242
SRR9715742	Root	19.770
SRR9715743	Root	19.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.372
SRR8749028	MeJA induced 9h	12.190
SRR8749029	MeJA induced 9h	26.540
SRR8749030	Uninduced	833.471
SRR8749031	Uninduced	824.648
SRR8749032	Uninduced	431.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.847
SRR8400027	Control - Root	12.898