Gene detail

Gene detail information of Glyur000178s00013230

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G06050.3	4.00E-173	oxophytodienoate-reductase 3
NR	XP_003542357.1	0	PREDICTED: 12-oxophytodienoate reductase 3-like [Glycine max]
COG	YP_007515905.1	9.00E-109	NADH-dependent flavin oxidoreductase [Bradyrhizobium oligotrophicum S58]
Swissprot	tr\|Q9FEW9\|OPR3_SOLLC	0	12-oxophytodienoate reductase 3
trEMBL	tr\|I1LY51\|I1LY51_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G16940.1}

Sequence

Transcript Sequence

>Glyur000178s00013230.1
AAACAGTCCTCCCTGGCTCCCTCTTCCCAATTGTTGCTGCTACATACATCATTTTTAGATTCTCAAAGTTGAAGCCAGGAGAGTGAAACATCACCCATCAACAGATTAATTAGCAAATGGCAGAGAATTCAACAATTAATGGAGGCACCACCACCACCACCCTCTTTTCTCCTTACAAGATGGCAAACTTCAACCTCTCTCACAGGGTGGTGCTGGCGCCGATGACGAGATGCAGAGCACTGAACGGGATTCCAAACGCAGCGCTTGCAGAGTACTATGCACAAAGATCAACTCCAGGTGGATTTCTCATCACTGAAGGAACCTTGATCTCTCCCACTGCTCCTGGGTTTCCCCATGTACCTGGAATCTACTCAGAGGAACAAGTGGAGGCATGGAGACCTGTAGTGGATGCTGTGCATGCCAAAGGCAGCATTTTCTTTTGTCAACTGTGGCATGTTGGTCGTGCATCTCATCCAGTGTATCAGCCTGGTGGGGCTGCGCCCATTTCGTCCACAAGCAAACCCATATCAGCAAGGTGGAGAATTCTGATGCCCGATGGTTCCTATGGCGTATACCCTGAGCCTCGGGCACTTACCACTTCTGAGATACCAGAAATAGTCCAGCATTATCGGCAATCAGCCATTAATGCAATTCGAGCAGGTTTTGATGGAATCGAGATTCATGGAGCACACGGGTATCTCATTGATCAATTCTTGAAGGACGGGATCAATGATCGAACTGATGAATATGGTGGATCACTTGAAAATCGGTGCAGATTCGTAATTGAGGTGGTTCGAGCTGTTGTTTCTGGTATTGGAGCAGAAAGGGTTGCTGTGAGAATTTCACCAGCAATTGATCACCTTGATGCCATTGACTCTGACCCACTTGGGTTAGGCTTAGCAGTGGTTGAGAGACTCAACAATCTCCAGAAAGAGCTGGGTAGAAAACTTGCCTATCTCCATGTTACTCAACCTCGATATACGGCTTATGGCCAAACTGAGTCAGGCAGACCTGGTAGTGAAGAAGAAGAAGCTCATCTGATGAGGAANCTGAGAAAAGCTTATGAGGGAACATTCATGAGCAGTGGTGGATTCACTAGGGAGTTGGGAATGGAAGCTGTANCTCAAGGTGATACTGACTTGGTGTCATATGGTCGTCATTTTATCTCCAATCCAGACTTAGTCTTAAGGTTTCAGCTTAATGCACCTCTAACCAGGTATAACAGGAAGACGTTTTACACCCAGCATCCTGTTATAGGCTACACAGATTATCNTTTCATGAGCAAAGGAGATAAGACCGAAGAGCCAAGGGCACGCCTTTGATTGTAATTTTGTTGTCTTTCAAATTTGANTTTGTTATATGTACAATTGGAGTCTCCAAATATTAAGTGAATGCTTTTGTTATGAAAACTTGCTTGTACAATAATTCCTATCATAGATTTCCTTTGGCCTTTGTATTCAAGTATACTGCTTACAGGCTGCAGCCCCTGTTATTATTTTTAAATTNCTTTGCCAATTTCCATAATAATTATAACCCAATATCTACAAATCCCTTAAGCAAGTATAACAGTGAAGGCAAGACATGTCACATGTATGTGCTATTGTATTGTGAGGCACATGTGACGTCGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	272242	275497	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05894	OPR	EC:1.3.1.42	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013230.1	PF00724.15	Oxidored_FMN	16	363	3.70E-89

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.427
SRR1783600	control	25.745
SRR1783602	moderate drought stress	21.581
SRR1811619	moderate drought stress	21.369

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	85.568
DRR006520	Root Summer glycyrrhizin high producing strain	82.163
DRR006521	Root Winter glycyrrhizin high producing strain	5.440
DRR006522	Root Winter glycyrrhizin high producing strain	5.046
DRR006523	Root Summer glycyrrhizin low producing strain	36.299
DRR006524	Root Summer glycyrrhizin low producing strain	36.011
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.655

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.673
SRR2868004	Drought Stress (root)	48.655
SRR2967015	Control (root)	46.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	217.467
SRR9715740	Leaf	160.955
SRR9715741	Leaf	332.088
SRR9715739	Root	89.261
SRR9715742	Root	161.610
SRR9715743	Root	148.384

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.256
SRR8749028	MeJA induced 9h	5.352
SRR8749029	MeJA induced 9h	4.329
SRR8749030	Uninduced	11.514
SRR8749031	Uninduced	7.190
SRR8749032	Uninduced	8.452

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.816
SRR8400027	Control - Root	54.196