Gene detail information of Glyur000178s00013229 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G35570.1 | 0 | O-fucosyltransferase family protein |
| NR | KEH32446.1 | 0 | GDP-fucose O-fucosyltransferase-like protein [Medicago truncatula] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-82 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072USY2|A0A072USY2_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:KEH32446.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 266281 | 271508 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013229.1 | PF10250.4 | O-FucT | 229 | 559 | 2.50E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.814 |
| SRR1783600 | control | 6.809 |
| SRR1783602 | moderate drought stress | 4.159 |
| SRR1811619 | moderate drought stress | 4.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.320 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.476 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.093 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.160 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.002 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.203 |
| SRR2868004 | Drought Stress (root) | 13.449 |
| SRR2967015 | Control (root) | 12.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.318 |
| SRR9715740 | Leaf | 6.088 |
| SRR9715741 | Leaf | 7.515 |
| SRR9715739 | Root | 1.705 |
| SRR9715742 | Root | 7.697 |
| SRR9715743 | Root | 7.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.461 |
| SRR8749028 | MeJA induced 9h | 73.473 |
| SRR8749029 | MeJA induced 9h | 88.549 |
| SRR8749030 | Uninduced | 179.392 |
| SRR8749031 | Uninduced | 97.664 |
| SRR8749032 | Uninduced | 114.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.590 |
| SRR8400027 | Control - Root | 12.616 |