Gene detail information of Glyur000178s00013227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06040.1 | 7.00E-120 | |
| NR | XP_003551123.1 | 0 | PREDICTED: DNA repair protein rhp7-like [Glycine max] |
| COG | YP_008461.1 | 3.00E-07 | hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9LPL4|SKP2A_ARATH | 8.00E-12 | F-box protein SKP2A |
| trEMBL | tr|I1MSA9|I1MSA9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 252745 | 256911 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.403 |
| SRR1783600 | control | 5.372 |
| SRR1783602 | moderate drought stress | 5.172 |
| SRR1811619 | moderate drought stress | 5.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.939 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.716 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.208 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.575 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.120 |
| SRR2868004 | Drought Stress (root) | 10.843 |
| SRR2967015 | Control (root) | 13.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.043 |
| SRR9715740 | Leaf | 6.732 |
| SRR9715741 | Leaf | 8.637 |
| SRR9715739 | Root | 7.775 |
| SRR9715742 | Root | 21.494 |
| SRR9715743 | Root | 18.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.739 |
| SRR8749028 | MeJA induced 9h | 30.511 |
| SRR8749029 | MeJA induced 9h | 14.853 |
| SRR8749030 | Uninduced | 24.280 |
| SRR8749031 | Uninduced | 9.632 |
| SRR8749032 | Uninduced | 10.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.140 |
| SRR8400027 | Control - Root | 12.568 |