Gene detail information of Glyur000178s00013209 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20670.1 | 7.00E-29 | Protein of unknown function (DUF1677) |
| NR | KHN17732.1 | 9.60E-80 | hypothetical protein glysoja_005929 [Glycine soja] |
| trEMBL | tr|V7CCE3|V7CCE3_PHAVU | 8.00E-80 | Uncharacterized protein {ECO:0000313|EMBL:ESW26566.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 164958 | 165419 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013209.1 | PF07911.8 | DUF1677 | 23 | 113 | 2.50E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.137 |
| SRR1783600 | control | 10.857 |
| SRR1783602 | moderate drought stress | 3.636 |
| SRR1811619 | moderate drought stress | 3.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.775 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.366 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.650 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.194 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.818 |
| SRR2868004 | Drought Stress (root) | 34.193 |
| SRR2967015 | Control (root) | 45.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.173 |
| SRR9715740 | Leaf | 40.518 |
| SRR9715741 | Leaf | 51.742 |
| SRR9715739 | Root | 73.807 |
| SRR9715742 | Root | 67.609 |
| SRR9715743 | Root | 69.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.019 |
| SRR8749028 | MeJA induced 9h | 10.699 |
| SRR8749029 | MeJA induced 9h | 8.583 |
| SRR8749030 | Uninduced | 8.971 |
| SRR8749031 | Uninduced | 0.938 |
| SRR8749032 | Uninduced | 3.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.514 |
| SRR8400027 | Control - Root | 31.287 |