Gene detail information of Glyur000178s00013204 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19130.1 | 1.00E-68 | |
| NR | XP_004508010.1 | 5.76E-116 | PREDICTED: uncharacterized protein LOC101514621 [Cicer arietinum] |
| COG | YP_007062861.1 | 2.00E-38 | hypothetical protein Syn6312_3274 [Synechococcus sp. PCC 6312] |
| trEMBL | tr|G7JT65|G7JT65_MEDTR | 6.00E-111 | Uncharacterized protein {ECO:0000313|EMBL:AFK49437.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 145626 | 146845 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013204.1 | PF06172.6 | Cupin_5 | 5 | 169 | 1.70E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 469.946 |
| SRR1783600 | control | 469.812 |
| SRR1783602 | moderate drought stress | 641.714 |
| SRR1811619 | moderate drought stress | 638.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 305.668 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 299.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 402.593 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 391.218 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 375.408 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 378.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 53.102 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 123.217 |
| SRR2868004 | Drought Stress (root) | 427.760 |
| SRR2967015 | Control (root) | 276.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.468 |
| SRR9715740 | Leaf | 49.936 |
| SRR9715741 | Leaf | 71.164 |
| SRR9715739 | Root | 473.129 |
| SRR9715742 | Root | 319.031 |
| SRR9715743 | Root | 337.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 577.589 |
| SRR8749028 | MeJA induced 9h | 675.576 |
| SRR8749029 | MeJA induced 9h | 683.461 |
| SRR8749030 | Uninduced | 1583.327 |
| SRR8749031 | Uninduced | 1056.743 |
| SRR8749032 | Uninduced | 1193.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 304.306 |
| SRR8400027 | Control - Root | 209.272 |