Gene detail

Gene detail information of Glyur000178s00013200

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19140.1	7.00E-98
NR	AFK47711.1	1.98E-169	unknown [Medicago truncatula]
COG	YP_004689236.1	5.00E-21	ubiquinone biosynthesis protein COQ9 [Roseobacter litoralis Och 149]
trEMBL	tr\|I3T5B9\|I3T5B9_MEDTR	7.00E-170	Uncharacterized protein {ECO:0000313\|EMBL:AFK47711.1}

Sequence

Transcript Sequence

>Glyur000178s00013200.1
TGGGGCCAAATGGTGTAGTCCGTAGTTGACGAGGATTCATTCGTGGCAGATGGTTCAACACGTGTCACAACCATACACCTACTACGTGGAATCAAACAGTTCCGTTTCCATTCAAAAAAAAAAAAACAAATAGCAACACTTCTCCGAAGTTTTTCCCCCAAACAGAAACGGCGGCGGCGGAAAATGTACCGAACGGCGGCGAAGCGGTTGTTATGCGGTGCAAGGTACTACAATGGAAACGCTGGGCTCCGGTTCCGGCGTCCTCAGATGTTGATAGCCTGTTCTCGGTTTTACGCAACGGAGAGTCAACCATTTCCTAATCCACACTCTACCAATGATAGCATTCCCGTCCCCACCACCGAAATCCCTAACGTTTCTGATTCGGCTTCTTCTTCTTCATCATCATCAACGGCTGAAGATGCACGGTTCCATGAGACCCAGAAACCCGGAGCCAAGTACGAGGACGAACAATCTCGCTTGCTTCACGCCTCGCTCTCTCACGTCATGAAGTTGGGATGGACAGAAGCAGCGCTGATTGCAGGAGCAAGGGATGTTGGTCTGTCCCCTTCTATCGTTGGATCTTTGCCGAGGAAGGAAGCAGCACTGGTTGAGTTTTTCATGGATGACTGCTTACAAAGACTCATTGATAAAATTGACTCAGATGTGAGTTTGAAAAATTTGACACCAAGTGACTGCATCTCTAAGCTTATCAGATTTCGTCTAGAAATGCAAGCTCCATACATATCCACATGGCCTCAAGCTCTTAGCATCCAGGCACAACCAGTCAATGTTCCAACAAGTTTTAAGCAGAGGGCGATGCTTGTGGATGAGATCTGGCATGCTGCTGGTGATAATGCCTCTGACATTGATTGGTATGCGAAGCGCACTGTCCTTGGAGGAATATACTCAACGACTGAGATTTACATGCTGACAGATGGCTCTCCTGAATTTCGGGATACATGGGCCTTTTTGGATGCTCGAGTGAAAGATGCTTTTGATATAAAGAAAACCATTCAAGAGGCACAGTATTTAGCAGAAACTGTGGGTGCCGGGCTGGGGAACATTGTTGGGAAAGTTCTTCGGAGATGAATCGTGGTGGGAAGATGCGCGGGTTGCATGCTTTTGTCCCTTTGGTTATATCTTAATCAATCAATGTTTTTCTTCAAAATAATATCTTGAAGGAGATAATACATTAAGTAATTATTATATTTCAGATTATTTCATTTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	124794	127745	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006744 ubiquinone biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013200.1	PF08511.6	COQ9	200	277	5.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.462
SRR1783600	control	13.460
SRR1783602	moderate drought stress	17.714
SRR1811619	moderate drought stress	17.475

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.296
DRR006520	Root Summer glycyrrhizin high producing strain	8.012
DRR006521	Root Winter glycyrrhizin high producing strain	16.137
DRR006522	Root Winter glycyrrhizin high producing strain	15.815
DRR006523	Root Summer glycyrrhizin low producing strain	11.102
DRR006524	Root Summer glycyrrhizin low producing strain	10.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.122
SRR2868004	Drought Stress (root)	43.675
SRR2967015	Control (root)	34.544

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	54.603
SRR9715740	Leaf	77.290
SRR9715741	Leaf	64.132
SRR9715739	Root	20.766
SRR9715742	Root	18.039
SRR9715743	Root	16.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.054
SRR8749028	MeJA induced 9h	32.008
SRR8749029	MeJA induced 9h	28.463
SRR8749030	Uninduced	30.336
SRR8749031	Uninduced	26.662
SRR8749032	Uninduced	21.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.215
SRR8400027	Control - Root	24.767