Gene detail

Gene detail information of Glyur000178s00013199.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42880.1	1.00E-172	Leucine-rich repeat protein kinase family protein
NR	XP_004508012.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At5g20690-like [Cicer arietinum]
COG	YP_004579826.1	3.00E-15	hypothetical protein [Lacinutrix sp. 5H-3-7-4]
Swissprot	tr\|Q3E991\|Y5269_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 (Precursor)
trEMBL	tr\|G7JS80\|G7JS80_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES92178.1}

Sequence

Transcript Sequence

>Glyur000178s00013199.1
GGGGGAGGGGAGGCACCGAGGCAGTGCAATGCATAAATGGGAACTTGGAAGCCAAATGTGCGTGGATAGATAAAGAGGGTAAAGCAAAAGCCCCTGAAATGGGGCTGACCGGGTCAAATCAAAATGAAGATGAAAATGCGAAACAATCGGAAGCATTGGAAGGAGGGAGGAGGAGTCGAAAGGAATGGCGGAAGCTATTCTTAGAAAGGCAGTGGGTAATTGTGGAAGGGAGGATTGGTCCATGCATGAATCCCCTCCTCTCAAACCATGACAACCTCCTCATCCCGTGGGCTCCCTTCCCAAATTACCCAACAAAACAAAAAAAGGCAAAACAAGTCTCACTCAGAGAAACCTGAATCTCTCCGAGCAGCGGTCCATTTCTACTGCCGGACCCCTCTGCTTTCCGGTTGCCAATGGCCGCTGTTCGCTGCCTTCTCCTCTCCCCTCTCACTCTCACCCTCTTCCTCTTCCTCTTCCTCTCCTCTCCTTCTCTTTCCGCTTCCGACACCGAAGCCCTCCTCAAACTCAAACAGTCCTTCACCAATTCCGATTCCCTCTCTTCCTGGGTCCCCAACCAGAACCCCTGTTCCTCCCGCTGGGTCGGTGTCATATGTTTCAACAACATCGTCTCCAGCCTCCACCTCGTCGACCTAGGACTCTCCGGCAACATCGACGTCGACGCTCTCCTCCAGATCCCTACCCTCCGTACCATCAGCTTCGTCAACAACACCTTCTCCGGCCCAATCCCACCCTTCAACAAACTCGGTGCCCTCAAGGCCCTCTACCTCTCCGAGAATCAGTTCTCCGGTCCCATCCCCTCAGATTTNTTCTCCCACTTAGCCTCCCTCAAGAAAATATGGCTCAACAACAACAAATTCTCCGGCGACATACCCGTATCCCTCACCGGCCTCCGTTTCCTCGCCGAGCTTCACCTCGAGAACAACGAGTTCTCCGGCAATGTCCCTGATCTCAAACAGGACATTAAATCGTTCGACATGTCGAACAACAAGTTAAACGGCGCGATACCTGATTCCATGGCGAGGTTCGACGCGAAATCGTTCAACGGCAATGCAGGACTCTGCGGGAAGCCTTTGGAGATTGGGTGCGATCAGTCCTCGACGGGGCCGAACCCAAATGGGGAAGGTTCAAGTTGGGCCGTTAAGGTCATTGCCATCCTCGTCGTTGCGGCGGTGGTGGCGGTGGTTTTCACGTTCTTGAAATCGAGGCGTGGGAACAACGATGATGACTTCAGCGTGATGAGTAGAGAGACTAAGGTGGAGGATCAGGTTGTGCAGGTGCACGTGCCGAGTTCGAACCATAGCAGGGCATCGGAGGGGAGCAAGAAGGATTCGAAGAGGGGTTCGTCGAGGAGTGGAATGGGCGATCTCATCATGGTGAATGATGAGAAGGGTGTGTTTGGTTTACCCGATTTGATGAAAGCTGCTGCTGAGGTTTTGGGGAACGGTGGATTGGGTTCTGCTTATAAGGCTGCAATGGCCAATGGGTTGTCTGTGGTGGTGAAGCGGATGCGGGAGATGAATAAAGTTAGCAGAGACATATTTGATGCTGAGATGAGACGCTTTGGCAGGCTCAGAAACCGCAACATCTTGACTCCTCTCGCTTACCATTACCGCAGGGAGGAGAAGCTGTTCGTCACTGAATACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGATCAAGTCATGCTGAACTGAACTGGCCTACCCGTTTGAAGATTGTCAAGGGAATTGCACGCGGGTTGGGNTTTCTCTACTCTGAGTTTTCTTCCGAAGACCTGCCCCATGGAAACCTCAAATCCAGCAATGTTCTACTAGCTGATAACTACGAGCCTCTCCTGAGTGACTATGCCTTTCACCCACTCATCAACCCCAACTACGCCGTGCAGACAATGTTCGCCTACAAGACTCCCGATTACATGCTGTACCAGCAAGTCTCACAGAAGACCGATGTNTACTGCCTCGGAATCATCATCCTCGAAATCATCACCGGGAAGTTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGGACTGATGTGGTGCAATGGGTCTTCACNGCGATTTCTGAGAGAAGAGAGGCAGAGCTGATTGACCCGGAGTTAACAAGCAACAACACGAGTTCCATCAACCAGATGCTGCAACTTCTCCAGATTGGGGCTGCTTNCACAGAGAGCAACCCCGAACAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTACAAGTATAAAAAGAGGATAATGTCAATATGCTAGCTTAGTACGATACAAAGTTGCTTTTGTAGGTGAGAGAGTTGCAGGCCTAGTAGGAAGGATTGCACTCAGCATCTTGACCCCAACACAACACATTTCGGTATTCATGAATATTAATGAATGATCCTCTCNAAACGTAGTGGTATATGCAATGAATGACAAACAAACAAACACAGGGCACAAGAGAATCATGTATAGAGGAAGAAAAAGAGGTGGAGGTAGAGAGAGAGTAATATTGAATGGCTTCATGGATAAGTTCCTTTACATATTGAGAGAATGTTGAAGCTTGGAGTCTTTCCCATGCATGTTTTTGTCCCTTTCAGGAGAGAGAGAGAGAGAGAGAGAGAGAAAAATTTGTCAAAGGTCCAAGCTGATCAGTTGAGTGGTGTGCCTCTTTATGCTGACATAGCGGCCCTTGGATATTATGTGTGCAATTCATATAAAGAAAAACAATGAAACCATTTTTGAGATCAGCATCCCTCAAAATTTACTGCTGAAAAGTTTGTACCCCCAAGTATTTCTCCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	120342	123863	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013199.1	PF08263.7	LRRNT_2	29	67	2.30E-11
Glyur000178s00013199.1	PF00560.28	LRR_1	120	142	0.17
Glyur000178s00013199.1	PF00069.20	Pkinase	346	611	6.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.188
SRR1783600	control	18.591
SRR1783602	moderate drought stress	28.288
SRR1811619	moderate drought stress	27.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.862
DRR006520	Root Summer glycyrrhizin high producing strain	15.710
DRR006521	Root Winter glycyrrhizin high producing strain	13.426
DRR006522	Root Winter glycyrrhizin high producing strain	13.410
DRR006523	Root Summer glycyrrhizin low producing strain	12.951
DRR006524	Root Summer glycyrrhizin low producing strain	13.137
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.820
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.891

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.893
SRR2868004	Drought Stress (root)	10.393
SRR2967015	Control (root)	10.252

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.074
SRR9715740	Leaf	11.426
SRR9715741	Leaf	9.091
SRR9715739	Root	12.186
SRR9715742	Root	12.875
SRR9715743	Root	11.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.248
SRR8749028	MeJA induced 9h	7.829
SRR8749029	MeJA induced 9h	4.965
SRR8749030	Uninduced	6.076
SRR8749031	Uninduced	3.483
SRR8749032	Uninduced	4.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.989
SRR8400027	Control - Root	18.967