Gene detail

Gene detail information of Glyur000178s00013198

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19170.1	0	Pectin lyase-like superfamily protein
NR	XP_007154563.1	0	hypothetical protein PHAVU_003G129300g [Phaseolus vulgaris]
COG	YP_004455771.1	2.00E-59	polygalacturonase [Melissococcus plutonius ATCC 35311]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	2.00E-128	Probable polygalacturonase
trEMBL	tr\|V7C8P1\|V7C8P1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26557.1}

Sequence

Transcript Sequence

>Glyur000178s00013198.1
TGATTTTGCATTTGGACCCACTATTACCCCATCATTGTCTCAGGAACCAACTTCAGTTCCAGTTCCCAAACCACTTCCCCCTCGTCTCTCACAGCTTCCCTTTCAATTCACTCCTTCGTTTTATTTCCCCCAAACAGATCCTCCCTTCACTGTTACCACCACACTCGCACCACGCCACTCCTCAAAAGCTTCCTCCTTTCTCAGTTCTCACCCACTTCCCAATTTTGGAATCAGATGCTCTGAAAAACCCAACAAAGACCCACGAAAGGAATCGATGAGTTTGGAGCGACCCACGTCGTGAGCTGCTATATCAAAGTCCCATTTTCGCAAAAAAGGGTAGGTAAGTTTGTTTCTCGTTGGTCGAATGATGGTGGAGACCTCGACGCTCGGGCGGTTCCACCAGCAAAGGCTCGACCTTAAGCGCTGGGTCCCAACATTCCTCACCTCACACAAGACCCTCTTCACCGTTCTCTGGATCGCCGCATTCGCCTCGGTTTTCCTGTGGCAGAGGAACGTCGTGGTGGGTGGCTTCATGGTGTTCGGCCGTGCTCCGGCGAGACCGATGCCGAAGCTCCGGCCGGTGGCTTTCAATTTGACGGATTTCGGAGGAGTCGGTGATGGGGTTACNGTCAACACTGAGGCCTTTGAGAGGGCCGTTTCTGCAATCTCCAAATTGGGGAAGAAAGGTGGGGCCCAGTTAAATGTGCCTCCTGGTCGTTGGCTCACTGCACCCTTTAATCTTACCAGCCATATGACTCTATTTCTAGCTGAAGATTCTGTTATACTCGGCCTTGATGATGAGAAGTATTGGCCACTAATGCCTCCATTGCCTTCGTATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGAAGTTTGATTCATGGTCAAAATCTTAAAGATGTTGTGATAACAGGCCATAATGGTACCATAAATGGACAAGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTAATCACTAATATTACTCTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTCACAATATTGGCTCCTGTATTTGAAGCTCCAAACACTGATGGCATAGATCCTGGCAAGTATCTTCTACTAAACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGAGTATCCAATGTCACGGTGGAGAATCTTATTGTATGGGATTCTAGGCGTGCCGTGAGGATTAAGACTGCACCAGGACGGGGCGGATATGTGCGGCAAATAACTTATCGGAATCTAACGTTTGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGATATGACCCGACGGCACTTCCAGTAATCAGAGACATAAGCTTCACCACCATCCATGGCCAGGGAGTTCGTGTGCCGGTACGTATCCATGGCAGCGAAGAGATTCCCATCAGAAACGTAACTTTCCGTGATATGTCAGTCGGGCTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCGTTTGTGCAAGGNCGCGTGATAGGGACCGTCTTTCCTGCTCCGTGTGAGAACCTCGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCTGCGTCCCAGAATGTAACGGATATAGATTATGATTTTTGAGGTGTNAGGTTCATTAATTCATGTCTTTGTTCCATCTCAATTTATGCCTGTATTAAGATCATTTTTGTGAGGTTGGAGCAGTNAAGTCATACTTTTTTCTCCTTTTGTACTTTCACTTCCCTACTCCATTTCATAGNTTTCTGAAGTGGAGTTGTAAATACGGAAAATTTTCAGATGCTTACAAAAGATTATTAGATTACACGAATGCATTGCCCGTGTGCCCTCATTCTCGAGGGGGATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	112169	116486	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013198.1	PF00295.12	Glyco_hydro_28	171	448	1.40E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.779
SRR1783600	control	36.110
SRR1783602	moderate drought stress	24.039
SRR1811619	moderate drought stress	23.830

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.091
DRR006520	Root Summer glycyrrhizin high producing strain	23.647
DRR006521	Root Winter glycyrrhizin high producing strain	9.754
DRR006522	Root Winter glycyrrhizin high producing strain	9.507
DRR006523	Root Summer glycyrrhizin low producing strain	22.511
DRR006524	Root Summer glycyrrhizin low producing strain	22.632
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.437
SRR2868004	Drought Stress (root)	30.104
SRR2967015	Control (root)	26.821

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.579
SRR9715740	Leaf	14.991
SRR9715741	Leaf	16.682
SRR9715739	Root	31.305
SRR9715742	Root	34.015
SRR9715743	Root	32.267

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.558
SRR8749028	MeJA induced 9h	9.632
SRR8749029	MeJA induced 9h	5.224
SRR8749030	Uninduced	4.465
SRR8749031	Uninduced	1.108
SRR8749032	Uninduced	1.318

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.558
SRR8400027	Control - Root	29.400