Gene detail

Gene detail information of Glyur000178s00013189

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20720.3	2.00E-98	chaperonin 20
NR	XP_003609971.1	1.57E-156	20 kDa chaperonin [Medicago truncatula]
COG	YP_007299469.1	1.00E-27	Co-chaperonin GroES [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprot	tr\|O65282\|CH10C_ARATH	2.00E-133	20 kDa chaperonin, chloroplastic (Precursor)
trEMBL	tr\|G7JS70\|G7JS70_MEDTR	6.00E-157	GroES chaperonin {ECO:0000313\|EMBL:AES92168.1}

Sequence

Transcript Sequence

>Glyur000178s00013189.1
CCGGACTCGGAGAATTCTAGAAGGCTCCATCAATCAAATAAAAACGAATCCTTGNTTAGGGTTTATCCTTTCATACTTCCACATCCAAGCTTCGGAGCACACTTCTGATAAGGTAGGAAGGGCACACTCCAATGGCGACCACCCAGCTCAGTGCATCATCGATTTCTACGAGGAACTTGTCATCCTTTGAACGGTTTCGAGCTTCAGCACTTCAATTTCCTTCTGCAGGGAANGCGAGAATTGGCACTCTCACACAAAGGTCGTTCCCGTCTCTGGTTGTCAAAGCTGTCACTGTTGTCGCCCCCAAGCACACCTCTGTCAAGCCACTAGGCGACAGAGTNCTGGTGAAAATCAAGGACGCAGAAGAGAAAACTGAGGGTGGGATTTTACTGCCNGCAACTGCTCAATCAAAGCCACAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGGAAATCAGTTGGGAAGAACAAAGTGGACATTAGTGTGAAGACAGGTGCACAGGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGATGATGACATCATTGGTATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAATGACAGAGTCTTGATAAAGGTTGCAGAAGCAGAGGAAAAAACTGCTGGTGGTTTGTTGCTCACAGAGGCAACCAAGGAGAAACCATCCATTGGCACTGTGGTAGCAGTTGGTCCAGGGCCTCTGGATGAGGAAGGCAACAGAANACCATTGGCCATTACACCTGGGAATACAGTTCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAAGGCCTCAGATGTCATGGCTGTCCTCTCTTAGTAACAAATTGTTTTTCGTGTTTTAATTAATTAATGTTGAGGGAAATGGACATTTTTTTTGCCAACGAGGCTTGAAATATAGTTGATTGCAACACTCTTCCTTTAGACATTCTGTTTTGCCTTTGTTGTACCCCGTTGTTTTGCATTTATTCTCAACGGCTTTTCACCTTCTGTCATGGTTACTTTCAAGTACCACCGTGCCCCCGATTTCTAGTGGCCAAGTATGTGGCCAGATCCTCATAATAAGTAATAACNTACTTTTTGATTCCTATCGGCTAGAAGTCTGGTTAGAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00178	60991	64064	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000178s00013189.1	PF00166.16	Cpn10	63	152	1.90E-28
Glyur000178s00013189.1	PF00166.16	Cpn10	161	253	1.00E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	175.500
SRR1783600	control	176.217
SRR1783602	moderate drought stress	105.266
SRR1811619	moderate drought stress	104.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	131.800
DRR006520	Root Summer glycyrrhizin high producing strain	130.617
DRR006521	Root Winter glycyrrhizin high producing strain	57.742
DRR006522	Root Winter glycyrrhizin high producing strain	55.803
DRR006523	Root Summer glycyrrhizin low producing strain	65.428
DRR006524	Root Summer glycyrrhizin low producing strain	66.227
DRR006525	Leaf Summer glycyrrhizin high producing strain	167.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	167.983

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	89.883
SRR2868004	Drought Stress (root)	51.181
SRR2967015	Control (root)	50.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	230.521
SRR9715740	Leaf	257.576
SRR9715741	Leaf	148.434
SRR9715739	Root	80.417
SRR9715742	Root	81.194
SRR9715743	Root	76.332

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	102.010
SRR8749028	MeJA induced 9h	61.914
SRR8749029	MeJA induced 9h	74.639
SRR8749030	Uninduced	23.495
SRR8749031	Uninduced	6.292
SRR8749032	Uninduced	20.411

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	156.436
SRR8400027	Control - Root	132.967