Gene detail information of Glyur000178s00013186 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19220.1 | 5.00E-51 | auxin response factor 19 |
| NR | XP_003551063.1 | 0 | PREDICTED: auxin response factor 19-like [Glycine max] |
| Swissprot | tr|Q8RYC8|ARFS_ARATH | 4.00E-56 | Auxin response factor 19 |
| trEMBL | tr|I1MS55|I1MS55_SOYBN | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 56965 | 60013 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.517 |
| SRR1783600 | control | 67.173 |
| SRR1783602 | moderate drought stress | 92.684 |
| SRR1811619 | moderate drought stress | 92.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.369 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 53.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.885 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.965 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 74.603 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.252 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.733 |
| SRR2868004 | Drought Stress (root) | 35.175 |
| SRR2967015 | Control (root) | 44.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.713 |
| SRR9715740 | Leaf | 11.295 |
| SRR9715741 | Leaf | 13.333 |
| SRR9715739 | Root | 13.489 |
| SRR9715742 | Root | 56.051 |
| SRR9715743 | Root | 49.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.074 |
| SRR8749028 | MeJA induced 9h | 25.741 |
| SRR8749029 | MeJA induced 9h | 11.846 |
| SRR8749030 | Uninduced | 25.547 |
| SRR8749031 | Uninduced | 21.823 |
| SRR8749032 | Uninduced | 12.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.173 |
| SRR8400027 | Control - Root | 61.070 |