Gene detail information of Glyur000178s00013185 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20730.2 | 1.00E-05 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
| Swissprot | tr|Q6Z2W3|ARFE_ORYSJ | 3.00E-06 | Auxin response factor 5 |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 51700 | 54215 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.545 |
| SRR1783600 | control | 18.756 |
| SRR1783602 | moderate drought stress | 19.745 |
| SRR1811619 | moderate drought stress | 19.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.419 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.139 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.251 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.789 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.076 |
| SRR2868004 | Drought Stress (root) | 30.214 |
| SRR2967015 | Control (root) | 36.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.478 |
| SRR9715740 | Leaf | 3.012 |
| SRR9715741 | Leaf | 4.418 |
| SRR9715739 | Root | 9.139 |
| SRR9715742 | Root | 57.275 |
| SRR9715743 | Root | 48.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.220 |
| SRR8749028 | MeJA induced 9h | 7.198 |
| SRR8749029 | MeJA induced 9h | 1.107 |
| SRR8749030 | Uninduced | 2.225 |
| SRR8749031 | Uninduced | 1.966 |
| SRR8749032 | Uninduced | 1.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 70.892 |
| SRR8400027 | Control - Root | 72.378 |