Gene detail information of Glyur000178s00013183 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17210.1 | 9.00E-34 | heat stable protein 1 |
| NR | XP_007137199.1 | 7.74E-46 | hypothetical protein PHAVU_009G108000g [Phaseolus vulgaris] |
| COG | YP_003372990.1 | 1.00E-19 | stress responsive alpha-beta barrel domain-containing protein [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q9LUV2|POP3_ARATH | 2.00E-42 | Probable protein Pop3 |
| trEMBL | tr|V7AX63|V7AX63_PHAVU | 3.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:ESW09193.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00178 | 29503 | 30908 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000178s00013183.1 | PF07876.7 | Dabb | 8 | 103 | 4.60E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.747 |
| SRR1783600 | control | 17.641 |
| SRR1783602 | moderate drought stress | 10.611 |
| SRR1811619 | moderate drought stress | 10.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.666 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.250 |
| SRR2868004 | Drought Stress (root) | 11.148 |
| SRR2967015 | Control (root) | 9.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 84.976 |
| SRR9715740 | Leaf | 0.817 |
| SRR9715741 | Leaf | 19.719 |
| SRR9715739 | Root | 2.805 |
| SRR9715742 | Root | 4.068 |
| SRR9715743 | Root | 4.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.286 |
| SRR8400027 | Control - Root | 52.544 |