Gene detail

Gene detail information of Glyur000177s00010930.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17860.1	2.00E-32	jasmonate-zim-domain protein 3
NR	XP_004498265.1	5.33E-160	PREDICTED: protein TIFY 6B-like [Cicer arietinum]
Swissprot	tr\|Q9LVI4\|TIF6B_ARATH	3.00E-37	Protein TIFY 6B
trEMBL	tr\|G8A016\|G8A016_MEDTR	3.00E-158	Jasmonate zim-domain protein {ECO:0000313\|EMBL:KEH40585.1}

Sequence

Transcript Sequence

>Glyur000177s00010930.1
ATGGGTCTACGCTCTCTGGCGAAGGAGGAGATGAACAGCTTGGCAAAAGGTTCAGCAGTAAAATGGCCCTTCTTGAACAAAGTCTCTGCTCATCCGCATTTGATGTCTTTCAATGCTTCTGAAGAAGACAAGGCTAAAATTATGGTGTCTGATTCCATAACATCTGCTGGTTTTTTGGCCATCCCAAGTCTAGATGCATTTGACTCTATTCAAAAGCACACTGGGGTTGCATTACAGAAATCTTTCAATCATGATGGACAAGGTGGCTTTCATTTTTCCATGACTCCGTATCCTGTACAACATGATGTGAATTCTGTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTTCCAATCAAGAAATTTCAGTTTCCGTGGGACATCCATTCCTAAAGAATCATTTTGCAACTGTTGGTCAGAATATGAGTGGTGCTAATGTGAAGCAACCACTGCTTGGGGGATTACCTGTTGCAACACCTCATTCAGTTCTTCCCATTGTTGGTGCTGTTGCTGGATTGACTGAACCATGTGTGAAACCATCTGCACCTGCTCCTCAACTTACCATCTTTTACGCTGGTACAGTGAATGTCTTTGATGATATCACCCCTGAGAAGGCACAAGCCATCATGTTGTTAGCTGGGAGTGGCTTATCTGCAGCTTCAAACATGGCACAGCCCGAAGTTCAGGCACACAGCTCGAAGTTCGCAGCAGGCGATGGTGTGCCTGTGAGCCAACCCATAAATATACCACCCGGTTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTGCACGGTCAGCGAGTGGCTCAAGTAGCAATGATGAATTTCAGGCAGCTAAAACATCTAGAGGTGCTACTACCACTTCTGTCAGCAAAGTGGAGACCCCAAAAGTAGTCAATGCAACGGCCATGTTTCCATCAGCTATACCGCAGGCTCGCAAAGCATCATTGGCTCGATTTTTGGAGAAGCGCAAGGAAAGGGTCACGAGTTCAGCACCATATAACCTCAACAAGAAGTCCGAGGATGCATCAATGATGAATTCAATGGTTACTAACATCTTTGCAGCTACCGGTACTAATATGCCTTCAGCCAAGCAAGGATAACCCCTTCTTATAGGAGAAACATCTGCTGCAACTTGCAACTATTTATTGTAAGCATATTACTTTATTCTTCCATAATTAAAATTTGTGCTGAGATTCTNAAGTATCAAGCTACATTTGGTAGTGGTACATAGGTAGATGCCTTTACCTTAAAGTATTTTTGTGGTTGAGAGCTTTACCTTATTACTTGAAAAAGTTGTTGGATTACCTTCCAATAGTATAGCATTAGCATAGACCACTANATGTAACTATATCTGACAATTTCTTACATTGGGGGAATTAAAAGCAAGTTTAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	267662	270870	-

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010930.1	PF06200.9	tify	180	214	6.60E-18
Glyur000177s00010930.1	PF09425.5	CCT_2	313	337	2.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	59.676
SRR1783600	control	60.559
SRR1783602	moderate drought stress	64.698
SRR1811619	moderate drought stress	64.369

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.240
DRR006520	Root Summer glycyrrhizin high producing strain	62.430
DRR006521	Root Winter glycyrrhizin high producing strain	106.951
DRR006522	Root Winter glycyrrhizin high producing strain	104.205
DRR006523	Root Summer glycyrrhizin low producing strain	99.494
DRR006524	Root Summer glycyrrhizin low producing strain	99.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	93.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	93.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.923
SRR2868004	Drought Stress (root)	83.510
SRR2967015	Control (root)	89.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	151.753
SRR9715740	Leaf	231.424
SRR9715741	Leaf	205.673
SRR9715739	Root	29.495
SRR9715742	Root	53.102
SRR9715743	Root	48.693

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.409
SRR8749028	MeJA induced 9h	57.473
SRR8749029	MeJA induced 9h	62.389
SRR8749030	Uninduced	87.384
SRR8749031	Uninduced	108.424
SRR8749032	Uninduced	104.819

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.212
SRR8400027	Control - Root	71.518