Gene detail

Gene detail information of Glyur000177s00010926.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20710.1	0	beta-galactosidase 7
NR	XP_003533125.1	0	PREDICTED: beta-galactosidase-like [Glycine max]
COG	YP_003380010.1	2.00E-52	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|P49676\|BGAL_BRAOL	0	Beta-galactosidase (Precursor)
trEMBL	tr\|I1L2W1\|I1L2W1_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000177s00010926.1
ATGGGCACATCTCGTGCACTTTTGCTGTTATGTTTGGCATTGATTAGCTTAACAATCAATGCTGTGGATGTTTCATATGATGGAAGGGCCATTAAGATTGATGGCAAAAGAAAAGTCTTAATCTCTGGTTCAATTCACTATCCCCGTAGCACTGCCGAAATGTGGCCATCATTGATTAAGAAAGCAAAAGAAGGTGGGCTCAATGCGATTGAAACATATGTCTTTTGGAATGCTCATGAGCCTCAACGTCGTCAGTATGATTTTTCAGCAAATTTAGATCTGGTGAGATTTATTAAGACCATTCAAAATGAAGGCCTTTTTGCCGTGCTTCGAATTGGTCCATATGTATGTGCAGAATGGAATTATGGAGGATTTCCTGTGTGGTTGCATAATATTCCAAACATGGAATTCAGGACAAACAATGCTGCTTTTAAGGAAGAGATGCAAAATTTCACAACTTTGATAGTTGACAAACTGAGGCATGAAAAGCTCTTTGCATCACAAGGAGGACCCATTATTCTTGCTCAGATTGAAAATGAGTATGGAAATGTTATGGGTCCATATGGTGATAATGGCAAAAAGTATGTTCAATGGTGTGCTCAACTAGCTCAGTCTTATCAAGTTGGTGTACCATGGATTATGTGCCAACAGAGTGACGCTCCAGATCCTNTGATTAACACATGCAATGGTTGGTACTGTGACCAATTTTATCCCAACAGCAACAATAAACCAAAGATGTGGACAGAGAATTGGACTGGCTGGTATAAGAATTGGGGAGGAAAACTTCCGCACAGAACTGCTGAGGATGTTGCTTTTGCTGTTGCGCGATTTTTCCAATATGGTGGCACATTCCAAAACTACTATATGTACCATGGAGGCACCAATTTTGGACGAACTTCTGGAGGACCATATATCACAACTTCCTATGATTATGATGCTCCTTTGGATGAATATGGTAACTTAAATCAACCTAAGTGGGGACATCTTAAGCGACTTCATGAAATTTTGAAATCAATGGAAGATGTCTTAACTCAAGGTTCCTCAAACAACATTGAGTATGGAAATATGGTCACAGCCACAGTTTACAGCTATGCTGGAAAATCAGTTTGCTTCCTTGGAAATGCACATTCATCAATGGATGCTACAATTAACTTTCAGAATACTCAGTACACTGTTCCTGCATGGTCTGTGTCTATCCTTCAAGATTGTTATACAGAAACTTACAGCACTGCAAAGGTCAATGCTCAAACATCCATAATGGTCATGAAGGACCATGAAGAAGATACAGAAGAAGATGAACCAAATATATTGAATTGGCAATGGACGCATGAGCCCTATGTGCAAATGAAGAATGGCCAAGTCCTTGGTTCAGTTTCTCGTAGTGCTCCTCAACTTTTTGATCAAAAGGTTGTCACAAATGATACTAGTGATTACTTGTGGTACATCACCAGTGTTGACATTAGTGAAAGTGATCCCATTTGGTCCAATAAAGATGTTAAGCTGAGAGTGAACACCAATGGCCATGTACTTCATCTATTTGTTAATGGAGGACATGCTGGTTCCCAATATGCTAAAAATGGACAATACCAATTTGTTTATGAGGCAAATGTCAAATTGAAGCTTGGAAAGAATGAGATAAGTCTACTCAGTGGCACCGTTGGTTTACCTAACTATGGTGCCTACTTTGACAATGTCCAAGTTGGTATAAGTGGTCCAGTTCAGTTGGTTGCACTAAAGAATGACACTGAGGTCATCAAGGATATCACCAAAAATGTATGGAATTATAAGGTTGGATTGCACGGTGAGAATGTGAAGCATTACAGCCAGGATAACAATAGAGGATGGTTCACAAATGGTCTTCCAACAGATAGAGTATTTGTTTGGTACAAGACTATGTTCAAGAGTCCTGTAGGAAAGGATCCTGTTGTGGTGGATTTGAAGGGGCTAGGAAAGGGTACAGCTTGGGTAAATGGTAACAACATTGGTAGGTATTGGCCAAGCTATCTTGCAGATGAGAATGGTTGCAGTTCCACATGTGATTACCGGGGAGCATATACCTCAAACAAATGTGTGTCAAAGTGTGGAAGGCCTTCTCAAAGATGGTATCATGTCCCGCGATCATTCCTTCGCGACGATGATCAAAATACATTGGTGTTGTTTGAAGAGTTGGGAGGTCACCCCTATGATGTGAAATTTGCCACCGTTACTATTGCCAAAGCTTGTGCTAATGCTTATGAAGGGCATGTGTTGGACTTAGCATGCAATGAAAACCAAGTCATATCTGAGATCAAATTTGCCAGCTTTGGTGCACCAGAGGGTGAATGTGGATCCTTTAAGAAAGGCAATTGTGAATCTCCTGATACTTTATCTGTCATAAAAAGGAAATGTCTTGGCAAGCAGAGTTGTTCCATTCATGTTACTGAAAGATTTCTTGGACCAACTGGGTGCAAAGTTCCACAGAATAAGCTTGCAGTTGATGCAGTTTGTGAGACAACAGTGAACAGTGAAATGAAGCACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	226178	230770	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010926.1	PF01301.14	Glyco_hydro_35	32	334	3.60E-117
Glyur000177s00010926.1	PF02140.13	Gal_Lectin	752	829	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.102
SRR1811619	moderate drought stress	0.119

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.044
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.033
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.007