Gene detail

Gene detail information of Glyur000177s00010924

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23220.1	5.00E-32	Dynein light chain type 1 family protein
NR	XP_010271285.1	1.21E-68	PREDICTED: dynein light chain 1, cytoplasmic [Nelumbo nucifera]
Swissprot	tr\|Q39580\|DYL1_CHLRE	1.00E-18	Dynein 8 kDa light chain, flagellar outer arm
trEMBL	tr\|A0A061E8U7\|A0A061E8U7_THECC	5.00E-68	Dynein light chain type 1 family protein {ECO:0000313\|EMBL:EOY01068.1}

Sequence

Transcript Sequence

>Glyur000177s00010924.1
AATGGTGCAAAAATGGGGTGAACACTCATTATCATTATTGCAACTATATATTTCTTTGACGCTGTAGTGAGTATACTCCTGAACCCTTTTTGTACTATCTTTCTTGCTCTTCCANGTTCCCATCATTCCACTACACTGTACATTTTTCTTTTTCTTTTTCTTTTTTTCCCCCAAGCCCAAGAACACAAGATATAGTTGCCAATGCTTTGAGCAGAAANGGTTTGGTTTGGTTGGAGAGTGATGATGAGAGAGTGAGCTAGTTAAGTAAGTGGGGGCAGGCAGAGGAAGGAGCAGCACATGGAAGAAGCAGAGAAGGAGTTAGAGAGAAGGAGCAAGTTTCTAAACAGTTTGATACAGAAGAAGAAAGCCATAGAGCAACAACAAGAGAAGNATGNTGATAATGATGATAGTAGAAGACTCAAGGTTCATGTCAGAGCTTGTGACATGCCTCTCNCTTTGCAGAACCATGCCTTCCAGTGTGCACGTCACCACTTGGATTCTATGCTTCCCAAGAAACTTGANAGTAAACGCCTGGCACTGGCCCTTAAGAAGGAATTTGATTCTTCTTATGGTCCAGCTTGGCACTGCATTGTGGGCACTAGCTTTGGTTCCTATGTTACACATTCTGTTGGTNGTTTTTTGTACTTCTCCATTGACAAGGTTTATATCCTTCTCTTCAAGACAGCTGTTGAACCTTTNCACCATTGATAACTTCCACAACTATGAGTCATGCCTCCTTGGCAAAATAAATTTCAAAAACAAAAAATTAAACCAGCTGATATGTAAAATTATAAATTAAACATTTGAAGACACTTATGTATCCTGTAATGTATTTGATGCACTTCTATTTAGATTTTTGTCTTCTGTGGGAGAGCCCTTAAAATGAAAAATCTATTGTGGCAAGTCTCAAGATATTCATTCATATTGTTCAGCTACTGAATTATAGTTTGATATTTTTGTATACTAATTTGGGTCCTACCAAATAGGATATAAGACCTACATAAATTTCATCCAATCATAGAGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	213756	216660	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007017 microtubule-based process

cellular_component
GO:0005875 microtubule associated complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010924.1	PF01221.13	Dynein_light	41	129	3.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.225
SRR1783600	control	29.931
SRR1783602	moderate drought stress	22.083
SRR1811619	moderate drought stress	21.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.073
DRR006520	Root Summer glycyrrhizin high producing strain	46.085
DRR006521	Root Winter glycyrrhizin high producing strain	130.616
DRR006522	Root Winter glycyrrhizin high producing strain	127.603
DRR006523	Root Summer glycyrrhizin low producing strain	64.174
DRR006524	Root Summer glycyrrhizin low producing strain	64.536
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.215
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.933
SRR2868004	Drought Stress (root)	22.823
SRR2967015	Control (root)	24.019

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.249
SRR9715740	Leaf	7.948
SRR9715741	Leaf	9.531
SRR9715739	Root	18.039
SRR9715742	Root	29.809
SRR9715743	Root	30.693

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.943
SRR8749028	MeJA induced 9h	37.624
SRR8749029	MeJA induced 9h	44.826
SRR8749030	Uninduced	43.827
SRR8749031	Uninduced	4.446
SRR8749032	Uninduced	6.952

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.437
SRR8400027	Control - Root	46.464