Gene detail

Gene detail information of Glyur000177s00010917

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10750.1	9.00E-86	Phosphoenolpyruvate carboxylase family protein
NR	XP_004498273.1	1.33E-157	PREDICTED: 2-keto-3-deoxy-L-rhamnonate aldolase-like isoform X1 [Cicer arietinum]
COG	YP_572133.1	3.00E-32	HpcH/HpaI aldolase [Chromohalobacter salexigens DSM 3043]
trEMBL	tr\|A0A072VR03\|A0A072VR03_MEDTR	2.00E-146	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, putative {ECO:0000313\|EMBL:KEH40570.1}

Sequence

Transcript Sequence

>Glyur000177s00010917.1
ATGGTGATCACTACCACCTTCAGTGCTACAGCATCAACAACACCACCAAGAACAACCACCATCACATCCCTCTCTTCCCTTTTTCCCACAACAAAACNCCATTCTCTCACCCCTTCCATTCTCAAATTCAATTTCAGATTCAACCCCTTCTCTTCCTCCCTCAGCCCCATCACCCATTCCTCCAGAAGGCCCAACACCCCACCCACTCCCNAATCCTCCACTACTACCTCCGCCACCTCCTCCTCCCGCCGGAACCTCAAGTCCCGCCTCCGCTCCGGCGACACCCTCTACGGCCTCTTCCTCCTCTCCTTCTCCCCTACCCTGGCCGAGATCGCGGGCCTCGCCGGCTACGACTTCGTCGTCGTCGACATGGAGCACGGCCACGGCGGCATCTCCGACGCCCTCCCCTGCCTCCACGCCCTCGCGGCAGCTGGAACCGCCGCCATCCTCCGCGTCCCTGAAACCACCGCCGCGTGGGCCAAAAAGGCCCTAGACCTGGGCCCACAGGGCATCATGTTCCCCATGGTGGAGTCCGCCGAATCCGCCGCAAATGCCGTCTCCTACTGCCGCTTCCCCCCTTCCGGGCTTCGCGGCTCGGCCCACCCAATCGTGGAGTCCGAGGAAGGGGTGAAGAGGACCGAGGAGATCGCGGCCGTTGACGGCGTTGACTGCGTGCAGATGGGGCCGTTGGATCTAAGCGCCAGCATGGGGTACCTGTGGGACCCGGGGAACAAGAACGTGAGGGACGCCTTGAGGGAAGCCGAGAGGAAGGTGCTGTTNAGAAACGACGATGGCGTTTACCTCTCTGGCTTCGCGATGCCGCATGATGGACCCAGGGATCTCAGGTCACGTGGCTATCACATGGTGTCCGGTGCTACTGACGTGGCGTTGTTTAGAAATGCTGCCGTGGAGGATGTCGCGAGGTTCAGGACGGGGTTCGTAGAGGAGGGTTCGGATAGTGAAAGGGAAGAGGGTAAAGAGGGTGATGAGAAGTACTGGAGTGAATGAGAATGGTGTTTTTTGGATTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGTCTCGATTTTTGTAAAATTAGGCGATGTAGTTATGATATGCCTTTTAGGGTATGTTTGGATTGGCTTATGCAGAGCTTATGAACACAGCTTATGACTGATTCATAAGCTGTTTTGGGCTTATTTTTCATAAGCTACCCAGGATAGCATATCAAAACAGCTTATGACTTATATAAAATAAGTTTCACTATAATTTTTCTTCGATTATAAAAGTAGCTTATACAGCTTATGCCATAAGCAGTAGATAAACTTGTTATCCAAACAGGGCCTTAATCTTCAATGAATATTACTCTTATGATCTGTTATATTGACATTGATATTGATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	178300	179913	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010917.1	PF03328.9	HpcH_HpaI	97	300	3.10E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.287
SRR1783600	control	45.834
SRR1783602	moderate drought stress	35.632
SRR1811619	moderate drought stress	36.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.507
DRR006520	Root Summer glycyrrhizin high producing strain	19.375
DRR006521	Root Winter glycyrrhizin high producing strain	6.479
DRR006522	Root Winter glycyrrhizin high producing strain	5.822
DRR006523	Root Summer glycyrrhizin low producing strain	24.722
DRR006524	Root Summer glycyrrhizin low producing strain	24.915
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.682
SRR2868004	Drought Stress (root)	13.331
SRR2967015	Control (root)	15.532

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.098
SRR9715740	Leaf	6.995
SRR9715741	Leaf	8.466
SRR9715739	Root	51.050
SRR9715742	Root	37.280
SRR9715743	Root	40.836

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.807
SRR8749028	MeJA induced 9h	4.748
SRR8749029	MeJA induced 9h	2.966
SRR8749030	Uninduced	0.739
SRR8749031	Uninduced	0.082
SRR8749032	Uninduced	0.169

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.099
SRR8400027	Control - Root	29.611