Gene detail information of Glyur000177s00010916 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59910.1 | 1.00E-48 | Histone superfamily protein |
| NR | AFK36036.1 | 1.57E-83 | unknown [Medicago truncatula] |
| Swissprot | tr|O65819|H2B3_SOLLC | 2.00E-74 | Histone H2B.3 (Fragment) |
| trEMBL | tr|I3S6Z4|I3S6Z4_MEDTR | 6.00E-84 | Histone H2B {ECO:0000256|RuleBase:RU000451} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00177 | 168913 | 169329 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000177s00010916.1 | PF00125.19 | Histone | 48 | 114 | 8.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.413 |
| SRR1783600 | control | 23.164 |
| SRR1783602 | moderate drought stress | 17.248 |
| SRR1811619 | moderate drought stress | 17.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.669 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.152 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.676 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.187 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.639 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.789 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.855 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 181.985 |
| SRR2868004 | Drought Stress (root) | 75.148 |
| SRR2967015 | Control (root) | 77.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.452 |
| SRR9715740 | Leaf | 3.788 |
| SRR9715741 | Leaf | 15.712 |
| SRR9715739 | Root | 23.658 |
| SRR9715742 | Root | 15.064 |
| SRR9715743 | Root | 19.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 273.180 |
| SRR8749028 | MeJA induced 9h | 119.775 |
| SRR8749029 | MeJA induced 9h | 205.311 |
| SRR8749030 | Uninduced | 10.571 |
| SRR8749031 | Uninduced | 17.371 |
| SRR8749032 | Uninduced | 9.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 93.916 |
| SRR8400027 | Control - Root | 87.245 |