Gene detail information of Glyur000177s00010910 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04420.3 | 2.00E-165 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004496137.1 | 0 | PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cicer arietinum] |
| COG | YP_006448235.1 | 3.00E-07 | hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799] |
| Swissprot | tr|Q9MA55|ACBP4_ARATH | 3.00E-135 | Acyl-CoA-binding domain-containing protein 4 |
| trEMBL | tr|K7LKF5|K7LKF5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G34180.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00177 | 141195 | 148120 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000177s00010910.1 | PF07646.10 | Kelch_2 | 27 | 70 | 9.40E-07 |
| Glyur000177s00010910.1 | PF13418.1 | Kelch_4 | 139 | 184 | 1.00E-09 |
| Glyur000177s00010910.1 | PF13418.1 | Kelch_4 | 190 | 231 | 9.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.009 |
| SRR1783600 | control | 8.152 |
| SRR1783602 | moderate drought stress | 6.275 |
| SRR1811619 | moderate drought stress | 5.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.218 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.606 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.362 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.929 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.650 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.832 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.346 |
| SRR2868004 | Drought Stress (root) | 35.965 |
| SRR2967015 | Control (root) | 38.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.439 |
| SRR9715740 | Leaf | 18.783 |
| SRR9715741 | Leaf | 19.726 |
| SRR9715739 | Root | 10.010 |
| SRR9715742 | Root | 20.277 |
| SRR9715743 | Root | 18.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.225 |
| SRR8749028 | MeJA induced 9h | 12.668 |
| SRR8749029 | MeJA induced 9h | 11.121 |
| SRR8749030 | Uninduced | 4.253 |
| SRR8749031 | Uninduced | 2.269 |
| SRR8749032 | Uninduced | 3.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.114 |
| SRR8400027 | Control - Root | 38.039 |