Gene detail

Gene detail information of Glyur000177s00010909.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20510.1	2.00E-130	OPC-8:0 CoA ligase1
NR	XP_004496136.1	0	PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum]
COG	YP_004963122.1	6.00E-110	4-coumarate:CoA ligase [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q84P21\|4CLL5_ARATH	1.00E-164	4-coumarate--CoA ligase-like 5
trEMBL	tr\|K7LKF3\|K7LKF3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G34161.1}

Sequence

Transcript Sequence

>Glyur000177s00010909.1
ATGTCAGGAGAGGAAATTTGGCCATCCATTGAAGAAGAATCTAGTAAATCTGTGCCTCCATTTGATGACAGGAGTGGCTACAATTCAAGAACAGGCATTTATCACTCTCTTGTTAGGCTTGGCACCAAGCATGAAATCCCAACAAAGCCTGACCTTAACACTGCCACTCTTGTGCTATCACAGTTCCCACAAGCAGACCTTGCTGAGGCAAGAATTGCATACATTGATTCAGGTACTAATCATAGTGTAAGCTANGGCGAGCTTCGCCGATCTATTAACTCCCTTGCATCAGCTTTGTTCCATGGACTTGAGGTTAGAAAAGGGGATGTGGTGTTTGTATTGTCCCCAAACTCAATCATGTACTCAACCATATGCCTAGCTGTGTTATCAGTTGGAGCAATTCTGACCACTGCCAACCCTCTCAATACTAAGTCAGAAATTGCCAAGCANGTAAGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGTTACACAAACTGGTCCCAACTGGGGTTCCTACAATTATCACCTCTCGTCCATCTGATGGAAAAATGCTATCAGTTGAGGAGTTAATAGAAGGATGCTATGATTCGCCAGAGTTGCCACATGTTCCTGTGGCACAATCAGACACTGCAGCTATACTTTACTCTTCAGGGACTACAGGGGTAAGCAAAGGTGTAGTTTTGACACATGCAAATCTCATTGCCATAGTGAAACTACTCTTCTGGTCTGCTGATGTGTCTGCATCGCAAGATGATGTTTTCTTGGCCTTCATTCCNATGTTTCACATATATGGACTGGTGTTCTTTGGATTGGGGTTGTTGTGTGTTGGTGTTACAACAGTTTTGATGCAGAAATTTGACTTCCAAGCTATGCTTGTTGCTATCCAGAGGCACAAAGTTAATAACTTACCAGCAGTGCCACCAGTGATCCTTGCAATGGTAAAATATGCTAGCAAAGCTGGGTGTGACTTGTCCAGCCTAAGAAGGGTGGGCACAGGTGCTGCACCTTTGAGTAAGGAAGTGGCACAGGAGTTCAGAAAGATGTTTCCTTGGGTTGAACTAAGGCAAGGTTATGGGCTAACAGAAAGTTGTGGGGCAGCAACATTTTTTGTGTCAGATAAAGATGCTAAAGCTCATCCAGGTTCATCTGGGAAGCTGATTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACAAGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAAAAGTCCTGCTATCATGAAAGGATATCTAGGAAATTTAGAGGCAACAACTGCAACAATTGATTCAGAAGGCTGGTTGAGGACAGGTGATCTTTGTTATATTGACGAGAATGGGTTTGTCTATATAGTNGAACGAATAAAGGAGCTAATCAAGCACAATGGGTATCAGGTGGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGACCTCTCAGAAGACCAAGTCATTCAATTTGTTGCAAGGCAGGTGGCTCCCTATAAGAAAGTGAGAATGGTGAGTTTCATTAACACTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCTCAAAGCAAATATCAACCTGTCTCCAAGTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	136766	138820	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10526	OPCL1	EC:6.2.1.-	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010909.1	PF00501.23	AMP-binding	65	467	3.10E-90
Glyur000177s00010909.1	PF13193.1	AMP-binding_C	477	552	6.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.192
SRR1783600	control	0.190
SRR1783602	moderate drought stress	0.178
SRR1811619	moderate drought stress	0.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.063
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.195
DRR006522	Root Winter glycyrrhizin high producing strain	0.191
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.954
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.091

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.241
SRR2868004	Drought Stress (root)	1.312
SRR2967015	Control (root)	0.553

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.212
SRR9715740	Leaf	0.327
SRR9715741	Leaf	0.325
SRR9715739	Root	0.000
SRR9715742	Root	0.242
SRR9715743	Root	0.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.432
SRR8749028	MeJA induced 9h	0.248
SRR8749029	MeJA induced 9h	0.284
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.162
SRR8749032	Uninduced	0.261

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.199
SRR8400027	Control - Root	0.265