Gene detail

Gene detail information of Glyur000177s00010906.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10500.1	2.00E-90	NAC domain containing protein 53
NR	XP_004496133.1	0	PREDICTED: NAC domain-containing protein 78-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	5.00E-119	NAC domain-containing protein 78
trEMBL	tr\|A0A072VMT5\|A0A072VMT5_MEDTR	0	NAC transcription factor-like protein {ECO:0000313\|EMBL:KEH43319.1}

Sequence

Transcript Sequence

>Glyur000177s00010906.1
TCCTCCAGCAGCTCCTACTAGAACCTTCTCTCACTATTGGATTTACACGATCAAAAACCCCCCGTNACTCTCTTTCACGACCACTCTCAATCCCAAATGTCTCACCTCTGAGCTCTAATCGGAAAACCCTAATCCCCAAATTCCTCTCAATTTTCCCCAATTCCTCTTTCTCTTCGCTTTCTCCTCCCCCCCCCCCAGTGATTCCATGGATTCCGCACCCGGATTCCGCTTCCATCCCACGGATGAAGAGCTGGTGTTTTTCTATCTGAAGCGTAAGGTTTCCACAAAATCCTTCCGCTTCGACCCCGTCGGCGTCGTCGACATCTACAAGTTCGAGCCATGGGACCTTCCCAGTATGTCGAAGCTGAAGACAAAGGACTTAGAATGGTACTTCTTNACCGTGCTTGACAAAAAGTACGGTAACGGCTCGAGAACCAACCGTGCAACCGACCGTGGTTACTGGAAAACCACCGGGAAGGATCGCCCGGTTAAGCACGGGAACCGCGAGGTTGGGATGAAGAAGACGCTTGTGTACCACCTCGGGCGGGCCCCACATGGGAACCGAACCAATTGGGTCATGCACGAATACAGGTTGCTTGATGAGGAATTGGCNGAGTTCGGAGCTCTGCAGGATCCTTATGTGCTGTGTAGGATCTTCGAGAAGAGTGGTTCGGGGCCTAAGAACGGGGAGAAGTATGGGGCCCCTTTGGGAGACAAGGAGTGGGAAAATGATAATGTTGTGGATCCCTTGCCNGTTGCTGTTGATGATGATGATGGACCTCTGAAGGTGGTTCCTGCTTCTGCTGTTAATGCTACTGCTGCTGCTGCTTCTGCGGTTGATGATGATGACCATCTTGAAACTGCTGACCTTGAAAAGGAGCTTGATACTAGTGTTACAATTGGAAGTGCTGGTTTTCCATNGAACTTCTATCATGGGGAGTGTAGTAGCCAACCTGTGCATTCCCAAGCATTACTTAATGATCAGAAGCCANTGGAAGGCACTTTTGGAATTTCTTGGCCTCAACCTTATAATATGGCTGAGCAATATGGTGTGGACACCAATTCAGTGAAAGATGAAGNCAATGGCGAGCTGAGCCATAATGAGAATCCTCTGAATTTCAATTGTGCATTTGATGGCCTGGATCTATCCTTGGATGCCGCTGGTGATCCTGTGATTTTTGGTGATGGNTCATACCTGGAAACTAATGATCTTTTGAACTCCGTGATAGATGATCCTTCTGGTGCTGAAATGCTAGATGAGTATCTTAAATATCTNGATGATGATGTTTTGAAGTATATATCTTTTGATTCTCCTCAGAATACAGGGAGTGAAATCCCTATTGACAACCATGGACAACCTTCCATTGAGCAGAATGTGGAGGGAGAAACCAGTGATAGTTCCCTGGCAAACAAACATGTTTTTGAAGCACAATCTGGTAATGAAGCTTCTTCAAAGCAGAATTCAGAGGCGCCAAATTTGGTATCAGATGATACAAATCCTTTTGTAAAGCGGGCCCATAAATTGTTGGCCGGCATACCTGCTGCGCCTGCATTTGCTTCAGAGTTTCCTACTAAGGAGTTTGCTCTTGGGCTTCATCCTGCAGCTCAGCCTTCCAATTCTGCTCATGTAACCGCAGGTATGATCAGTATAACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGGTTTAACACCATAATGTCTACTGGGTTTTCTCAACATGATGTTAATTCTGCTGCTTTGGTGCCTATTTCTGGTTTGGTCTGTAGCAAAACTGCATTTGTGTTGTCGCATGGCTGGATTTACCTAATGGGTTTTTCAGTTCTGATTCTTTCACTAACTTTCAAGATAGGAAGCTTCATGTATACCGGTAAATGACAAATGTAAGGCTGGCGGCTATGTATAATAAGCTGCAATCAGTTAAGTATCGCTTGGTGTTGATGTCACTCGTTGAATGACTAGGATCCCGTGACTTTGTAGATTTCTTTACGGTAATTTAGTCATATCACTGATATAAACATCATTCATGATTCATTGTAAACTTATACCCCTGCATTTTTTGTTTCAAAGTGCCAACAGATTTATACTGTTTGAATACAATTAGTAATATATGTTAGTCACTATTTACTTAATTAGATGCAAAGTTCTAACTGATAGGTTATGCATTATTCAGTATTTATTTTGTTGGACATGTAATTTGATTCACTAGGTATATAAGAATCAAGCGTAAGGCATGAGTCTCTATTGTCTTCGTCTTCTGAGAGAGTATGCTTCCACATTTTTGGATGCAGAGTNCCAACTGAGAATACTATACAATTCATAATAGATATTACTGTATTTTTTGCTTTCGATGAATTCAAAGTTTTGACTAACGGGTTATGCATGTTTTTTGTTGAGTTGGACGTGTAATNCGAATCACTAGGAATAGGAATCAAGTATACGGTTTATTTCGCTATTGCCTCGTCCTCTTGAGAGCATGAGAGTAGAAGCAGAGTTGACATTCCATATAGCAATGTAAAGTTGTCGACACTGTGAGTGCATCAACCAATGTCTCTGCCTAATCGATGCCCTCATCCCCATGAAGCTACCCACCGTTGCGACCTCACCCAATCTGTAACCAATTACCTTGGCTTTCTTTGAACCACAGCCTCATGTAATTTCTCATGATCAACACCTCAGTCGGTGTTTTCCTTAAATTAAAAATCCCATTTGTTCTCTTCATTAAGATTCCCCAACCCCCCCTTCTCACCCCAAACAAAGAAAAATGTTCTTATTGACCAAAAAAAGAAAAGAAAAATGTTCTTTTTTTTTTGCTCACCGCTATAAACTGTGTCTCCTTCGATTCTCGCTTCACTACGTTGGGAACCACCGATACAAAGGNGCTGCCGATAGTGGTGGGGTCTACAATGGAGCTGCTGATAATGNCCGCGTGCTGGCCGGCCTTGGTGCCAGAAGCAAAGTAGACCATGGTTGTGGGTGGATTGATCAAAAGTGCACTCTTTCTTGGATTTGGGTTTAACTTGTCAAGAATGACATGACGTGCCCAAGGCTCACCTTGGACAGACATTACCGCATGGTGGAGTGTTACGTGTTCTTGATTCACTATGGAGCGGTTGNGACTTGAGCGATGATGGGTGTTGCTTGCACTGCTTGTCTCAATGTAGCATCCATGAGATAAGATGTATTCCATATCACACTATCAGTGCAAGCTCCTATTTAGAGATTAGATTAGTTTTGGATTCGATTAATATATGTAAAAGTTTTACACGTAGTGAGTAGCATATTTATCTAATAACTGGGTTTGGACATGGATATAAATGATTACTCACAAAATAGTGTTAGTTATAAAGAAGTTTCGTGCGTCACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	118225	122665	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC
EAR motif-containing Proteins	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010906.1	PF02365.10	NAM	4	130	5.40E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.426
SRR1783600	control	12.523
SRR1783602	moderate drought stress	12.502
SRR1811619	moderate drought stress	12.470

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.630
DRR006520	Root Summer glycyrrhizin high producing strain	48.003
DRR006521	Root Winter glycyrrhizin high producing strain	21.410
DRR006522	Root Winter glycyrrhizin high producing strain	21.146
DRR006523	Root Summer glycyrrhizin low producing strain	36.919
DRR006524	Root Summer glycyrrhizin low producing strain	36.731
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.208
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.095
SRR2868004	Drought Stress (root)	37.862
SRR2967015	Control (root)	31.293

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.156
SRR9715740	Leaf	40.595
SRR9715741	Leaf	46.346
SRR9715739	Root	25.263
SRR9715742	Root	44.490
SRR9715743	Root	38.343

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.166
SRR8749028	MeJA induced 9h	39.707
SRR8749029	MeJA induced 9h	37.511
SRR8749030	Uninduced	34.739
SRR8749031	Uninduced	36.027
SRR8749032	Uninduced	55.777

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.643
SRR8400027	Control - Root	34.465