Gene detail

Gene detail information of Glyur000177s00010904

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03530.1	3.00E-85	RAB GTPase homolog C2A
NR	XP_004496130.1	1.03E-133	PREDICTED: ras-related protein RABC2a-like [Cicer arietinum]
COG	YP_004430219.1	1.00E-18	small GTP-binding protein [Krokinobacter sp. 4H-3-7-5]
Swissprot	tr\|O49841\|RAC2A_ARATH	7.00E-107	Ras-related protein RABC2a
trEMBL	tr\|K7N4G3\|K7N4G3_SOYBN	5.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G33441.1}

Sequence

Transcript Sequence

>Glyur000177s00010904.1
ATGATTCCGTGGTTAGTTAGGCACGGATTGGAAGCAGAAAAAGGAAACAAACATACAAACATGGGTTCTGCTTCAAAAGTTGGGAATAGTAGCTATGATTACTCATTTAAGGTTTTGTTGATTGGTGATTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCACCTTCATCTCCAATAACTCTGACTCACTTCATGACCTCTCCCCCACAATTGGAGTGGATTTCAAGATCAAGCTTTTTACTATTGGTGGTAAAAGATTGAAGCTTACTATTTGGGACACAGCTGGACAAGAGAGGTTTGGAACNGTAATAAGTTCTTATTACAGAGGCGCAGATGGAATCATTCTTGTCTATGATGTAACACGACGTGAGACATTTACAAACCTGGTGGATATTTGGGCAAAAGAGGTTGAACTTTACTGCACTAATCATGATTGCATCAAAATTCTTGTTGGCAATAAGGTGGATAAGGAGAGTGAAAGAGCTGTAAGCAAAGAAGAGGGTATGGCTCTTGCACAGGAACATAGATGCTTATTCCTAGAGTGTAGTGCCAAAACTAGAGAAAATGTTCAGCAATGCTTCAATGATCTCACATTAAAGATATTAGAGGTGCCAAGTTTGAGGGAAAAGGGGTCTGTAGCAGTGAGGAAACAAAAGCAAAAGGGCATATATGAGAAATCTCAAAGAGGTGGTTGTTGTTCATAGTAAATATGCTGCAACATGAATGTGCAAAAGTTTTTACAAAATGGGATACTACTNCAACTACTAGCTGGCCTTTGTATCATATCAAGTGTCACCAACAGCATATTTTCACAACTTCCACGAGAAGATGCTTGAGTTGAGATGGATATTGCTCTCTTTTGGAGCCACAGTATAACATAGATGATCAGAAAGCTCTTTAATATTTTGCACTTTTTCTTCTGTTATAGTTTTGGAAACACCTACAGATATTGTACATCATATGTAAATATGTCTCCAGTTTGAATGTTAGGATTGGTCTGAGATTTGCTTTGGTTAGGATATGCAGCAAAATTATATGTACTATTTTTGTGTTCTCCCCTCCCCTTATAAGTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	97790	101362	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010904.1	PF00071.17	Ras	37	201	2.60E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.911
SRR1783600	control	2.819
SRR1783602	moderate drought stress	1.994
SRR1811619	moderate drought stress	1.955

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.246
DRR006520	Root Summer glycyrrhizin high producing strain	5.270
DRR006521	Root Winter glycyrrhizin high producing strain	12.848
DRR006522	Root Winter glycyrrhizin high producing strain	12.354
DRR006523	Root Summer glycyrrhizin low producing strain	3.889
DRR006524	Root Summer glycyrrhizin low producing strain	4.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.053
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.083

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.423
SRR2868004	Drought Stress (root)	16.534
SRR2967015	Control (root)	13.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.051
SRR9715740	Leaf	4.894
SRR9715741	Leaf	4.564
SRR9715739	Root	0.709
SRR9715742	Root	3.262
SRR9715743	Root	2.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.789
SRR8749028	MeJA induced 9h	20.319
SRR8749029	MeJA induced 9h	8.853
SRR8749030	Uninduced	22.354
SRR8749031	Uninduced	5.734
SRR8749032	Uninduced	6.648

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.501
SRR8400027	Control - Root	7.431