Gene detail

Gene detail information of Glyur000177s00010902.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04390.1	7.00E-57	C2H2-type zinc finger family protein
NR	XP_007144239.1	3.46E-152	hypothetical protein PHAVU_007G139600g [Phaseolus vulgaris]
Swissprot	tr\|Q681X4\|ZAT5_ARATH	1.00E-47	Zinc finger protein ZAT5
trEMBL	tr\|V7BH81\|V7BH81_PHAVU	1.00E-152	Uncharacterized protein {ECO:0000313\|EMBL:ESW16233.1}

Sequence

Transcript Sequence

>Glyur000177s00010902.1
ATGGAAGCACCACCAGAGGAACTCTCTTTGGGTTCCAAAGAGCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCTTTCTCCATCACTGCCAATTCTTCCACTGGAGAAGGAGAAAGAGAAGATTGGTTCAATAATGGTGGTGATGTTGACAACAACAACAACAACAACAANNANGATGATNANAANAANAACAACAACAACAATAACAACAGCACTCCAACAACTTCTTCTGCAGGATTACAGGATAGCACTGATGAAGAGGAGGACATGGCCAATTGCCTTATCCTTTTGGCTCAGGGACAATCAAGGGAATCCCCAAAACACACAGAGGAAGATGGTGGAATGAACTACACAAAGTACAGCAGTAGGAAATTCTTGGAAGCTGCTACCTTGGATTCTGGGAGGGCAGGATTCTATGTGTATGAATGCAAGACATGTAACAGGACTTTCCCTTCATTCCAGGCACTTGGTGGCCACAGGGCTAGTCACAAGAAGCCTAATAAGGCCTTGGTCAATATTGGTACCCAAGAGAAAAAGCAACACTTTTTGGCATCAGATGAGGAAGAGTTTCAATTCAAGAACAACAATAATAAGTCACTTTCCCTTCAATTGAATAGCAGGGGGAATTTGTACAGCAACAACAACAACAACAACAATAAGTCCAAGGTGCATGAGTGTGCTATTTGTGGTGCTGAATTCACATCTGGGCAGGCACTTGGTGGCCATATGCGGCGCCACCGTGCACCGGTAGGGACCAACACCACACTTTCCTTGACCCCAATGGCTTTGGAACCACCAGAAGAAGAAGATCAACAACCCAGGAAGAGAAGGAATGTCTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGAAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACATGGGCAGAAACAACAACAACAACAGCAACAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAGCAACAACAGCAGCAGCAACAACAACAACAAACAAGTCTTGTCTTCTCAGCCCCAGCTTTGGTGGATTGTCATTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	88625	89716	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2
EAR motif-containing Proteins	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010902.1	PF13912.1	zf-C2H2_6	149	174	2.80E-10
Glyur000177s00010902.1	PF13912.1	zf-C2H2_6	232	257	9.90E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.667
SRR1783600	control	0.549
SRR1783602	moderate drought stress	0.277
SRR1811619	moderate drought stress	0.377

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.689
DRR006520	Root Summer glycyrrhizin high producing strain	0.588
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.107
DRR006524	Root Summer glycyrrhizin low producing strain	1.109
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.170

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.921
SRR2868004	Drought Stress (root)	3.896
SRR2967015	Control (root)	4.174

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.160
SRR9715740	Leaf	0.406
SRR9715741	Leaf	0.239
SRR9715739	Root	0.000
SRR9715742	Root	0.277
SRR9715743	Root	0.114

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.061
SRR8749029	MeJA induced 9h	0.001
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.062
SRR8400027	Control - Root	3.022