Gene detail information of Glyur000177s00010901 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18400.1 | 9.00E-47 | ribosomal protein L6 family protein |
| NR | XP_003536284.1 | 3.65E-66 | PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Glycine max] |
| COG | YP_001832498.1 | 1.00E-24 | 50S ribosomal protein L6 [Beijerinckia indica subsp. indica ATCC 9039] |
| Swissprot | tr|P26861|RM06_MARPO | 1.00E-46 | 60S ribosomal protein L6, mitochondrial |
| trEMBL | tr|I1KDT7|I1KDT7_SOYBN | 1.00E-66 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G36460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00177 | 79658 | 81100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000177s00010901.1 | PF00347.18 | Ribosomal_L6 | 59 | 135 | 3.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.567 |
| SRR1783600 | control | 7.559 |
| SRR1783602 | moderate drought stress | 8.729 |
| SRR1811619 | moderate drought stress | 9.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.067 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.051 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.988 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.922 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.145 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.038 |
| SRR2868004 | Drought Stress (root) | 24.099 |
| SRR2967015 | Control (root) | 23.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.154 |
| SRR9715740 | Leaf | 19.806 |
| SRR9715741 | Leaf | 13.796 |
| SRR9715739 | Root | 7.092 |
| SRR9715742 | Root | 9.858 |
| SRR9715743 | Root | 8.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.185 |
| SRR8749028 | MeJA induced 9h | 33.762 |
| SRR8749029 | MeJA induced 9h | 40.057 |
| SRR8749030 | Uninduced | 16.366 |
| SRR8749031 | Uninduced | 9.148 |
| SRR8749032 | Uninduced | 19.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.732 |
| SRR8400027 | Control - Root | 24.643 |