Gene detail

Gene detail information of Glyur000177s00010899.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G04360.1	limit dextrinase
NR	XP_004496127.1	PREDICTED: pullulanase 1, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_003704690.1	alpha-1,6-glucosidase [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q8GTR4\|PULA1_ARATH	Pullulanase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A072VMS0\|A0A072VMS0_MEDTR	Alpha-1,6-glucosidase, pullulanase-type protein {ECO:0000313\|EMBL:KEH43309.1}

Sequence

Transcript Sequence

>Glyur000177s00010899.1
GATAAAAATTGCAATTAANCCTTTATAAAATGAATCATTAAGGGTCTTGAAAAAAAATAAAAAGAACGAATCAATGAACGATTCACTGGAAAGGCTTTTAACTTTTTGTGAATGATTGATATGCATGTACATTTTTGGTGTACACAGAGTCACAGATGATGTAAATTGTAAAGACAAGAGAAAGGGNATGGGGGCGGAAGCAGCTGGTTGCCTGGTTCACTCATCTCACAGCGAGTGAGTGACACTGTAACTGTAACTGTGTGACTGTGAGGAAGGAGAATGCTTCGGTTAGTAGCATCACCCTTTTCTTCTCTTTCTCTCCCTTCTTCACCTTCCAACCTTCCTTCATCCTTCCCTCGCTCTTCACTCTACCTTCCCCTTCCTCCTTCGATTTTCCAAACAACCCCACTTCGCATCCATACTCCACCACCTCTTTCTTGCTCCCTTTCCTCTTCCTCTTCTTCTGTGGAGCTAACTGGTTCAATCTCTCAGATGGAGAATAATAGCTTGTTGTACTCCAGAGCTTATTGGGTTACTGAATCTGTTATTGCTTGGAACGTCGATGTTGGAAACGGGTTTTGCTACCTACTTGCCAGCAAAGATGCTTCTTTGACCATTGCAGATTCTAAAATTCAAGGTGAGGATTTGAAAATTAAGCTTGAAGAGGATAGGGCTGGCCTTCCTGCAAATGTGGTGGAGAAATTTCCACATATTCGAGGTTACAGAGCTTTCAAACTGCCACCCATTTCGGATGTTAAATCTCTTCTTAAATCCCAGTTAGCAGTTGCTATTTATGATTCTGATGAAAAATGCAGGAATTGTACTGGTTTGCAGTTACCTGGTGTTTTAGATGAGCTTTTCTCATATAATGGCCCCCTTGGTGCACTTTTCTCCGAGGAAGATGTGTCACTTTACCTGTGGGCGCCTACTGCTCAAGCAGTACATGCTTACATCTATAAGCACCCATCAGGAGATGATCCCATAGAAATTGTTCCCCTTGAGGAGGAACATGGCGTTTGGAGAACTAAAGGACCAAAAAGTTGGGAGGGATGTTACTATGTTTATGAAGTATGTGTATACCACCCGAGCACTTTACAGGTTGAAAAATGCTACACAAATGATCCATACGCTAGAGGACTTTCATCAGATGGCCGACGGACTTTTCTGCTTAATCTTAAATCTGATGAGTTAAAACCTGATGGATGGGATAATCTGGCATATGAGAAACCTATTTTACATTCTTTCTCTGATATAAGCATATATGAATTGCATATAAGGGATTTCAGTGCCAATGACCCATCTGTGCAACCTGAATTTCGTGGTGGTTATCTGGCCTTTACTTTGCCGGATTCGGCAGGTGTACTCCATCTAAAGAAACTATCAAGTGCAGGTATTACCCATGTACATCTATTACCGACATTTCAGTTTGCCGAAGTTGATGATCAAAAGGAGAACTGGAGATCTGTAGATACCTCAATACTGGAAAGTTTGCCACCTGATTCAGATCAGCAACAAGCTCTTATTACGGCCATCCAAAACTTTGATGGATATAACTGGGGGTACAACCCTGTCCTTTGGGGTGTTCCTAAAGGCAGTTATGCAAGTAATCCAAATGGTCCATACCGTACAATTGAGTTTCGCAAGATGGTTCAGGCTCTTAATCATACTGGCCTTCGCATTGTGTTGGATGTTGTCTACAATCATTTGCAAGGAAGTGGGCCCTCTGATGAACATTCTGTCCTTGATAAGATTGTTCCAGGTTACTATCTAAGAAGGAACACTGATGGTTTCATTGAGAACAGTGCTTGTATGAATAATACTGCCAGTGAGCACTNTATGGTTGAGCGCTTGATCCTTGATGATCTTGTACACTGGGCAATCAATTACAAGGTGAAAGCAAAAAATGCTCTCCATTGTTTAACAAAAGAAAAGGATGGAGTTGATGGTTCAAGCATCTACATATATGGTGAAGGATGGGACTTTGGTGAAGTAGCTAAAAATGGACGTGGGATAAATGCTTCTCAGTTCAATCTCTCAGGAACACAAATTGGGAGCTTTAATGATCGAATTCGAGATGCCATACTTGGTGGATCTCCATTTGGCCACCCTCTTCAACAGGGTTTTGCAACCGGTCTACTCTTGCAGGCTAAATACAAATCTGCATCATGGAAAGGGCTAAACCGAGTTCAACGGTGGGCACAAAATGGAGAAGAGGGGACCACAGTGGGGGGGAAGAAATGGAGGGAAGGAGAATTTACCTCAGGCACATGGTTTTTTAGGCCTAATGGCCATGACCATGGAACAGAAGCAAATATGAAGTCCATGCTTGCTACATCAATGGATCACATCCAGATTGGAATGGCTGCAAACTTGAAAGATTTTGTGCTAACCAACTCTAAAGGAGAAGAGGTAAAAGGGTCAGAAGTATTAACATATGATGGGACACCTGTTGCATATGCCTCATGCCCCATAGAAACTATAAATTATGTTTCTGCTCATGACAATGAAACCCTGTTTGACATTGTGAGCTTAAAGACTCCAATGGATATCACTGTAGCTGAGAGATGCAGGATAAACCATTTGGCAACAAGTGTTATAGCGTTATCACAGGGTATACCATTTTTTCACTCTGGAGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCATACAATTCTGGAGATTGGTTCAATAGAATCAAACCAAGACTGGCAGACCCATCCTTCAGGCCTCAAAGGATTGACATCCTTGCTACTGTGGACAATTTCTTAAACTTGTTGCGTATAAGGTATTCGTCACCACTTTTCCGCCTGAGGACNGAAAATGCTATCCAGGAACGAGTACGCTTTCATAATACTGGACCATCGTTGGTTTATGGAGTCATAGTGATGAGCATTGAAGATGGTCATGATGGCTTTCCTGAGTTGCCTCAGCTGGATCCCATATATTCTTTCATTGTCATTGTCGTCAACACGGGTCCAAAAGAAGTATCATTTGTTAGCCCTTCCCTGCAATCAAGAAGTCTCCAGTTGCATCCCATACAGGCAGTGTCATCTGATGACCTTGTTAAGAGGTCAACATACGAGGCATCTTCTGGCTGTTTTGTTGTGCCTGGAAGGACAACAGCTGTGTTTGTCGAGCCAAGGAAAACTACAAGTTAGAACACATAAAATCTACAATAAAATCTGTACAAGCTATCTTATAAAGGTAACAATTAGGTATAAAAAAAATCACCAAAAAAAGGTATAAATCAGATTTATAGAAATTGATGATACATCATCTCTGATAATAGATATCATATTGTAGATGCTGCTGCACCCTGAGAGGAACCGTTTAGTAGCATTATTATTAGTAGATCATATGGCATTTCTACTGTGGAGACAAGTTAAAGAGCCGTATTACATTAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00177	63867	76798	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48,GH13

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000177s00010899.1	PF02922.13	CBM_48	199	284	3.30E-12
Glyur000177s00010899.1	PF11852.3	DUF3372	800	957	6.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.168
SRR1783600	control	40.126
SRR1783602	moderate drought stress	48.967
SRR1811619	moderate drought stress	53.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.413
DRR006520	Root Summer glycyrrhizin high producing strain	32.962
DRR006521	Root Winter glycyrrhizin high producing strain	9.278
DRR006522	Root Winter glycyrrhizin high producing strain	8.711
DRR006523	Root Summer glycyrrhizin low producing strain	24.781
DRR006524	Root Summer glycyrrhizin low producing strain	24.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.335
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.170

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.052
SRR2868004	Drought Stress (root)	22.900
SRR2967015	Control (root)	21.155

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.110
SRR9715740	Leaf	15.281
SRR9715741	Leaf	14.650
SRR9715739	Root	9.409
SRR9715742	Root	31.795
SRR9715743	Root	27.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.939
SRR8749028	MeJA induced 9h	0.878
SRR8749029	MeJA induced 9h	0.746
SRR8749030	Uninduced	0.280
SRR8749031	Uninduced	0.092
SRR8749032	Uninduced	0.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.726
SRR8400027	Control - Root	52.789